View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16688_low_53 (Length: 294)
Name: NF16688_low_53
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_low_53 |
 | |
|
| [»] scaffold0750 (1 HSPs) |
| | |
|
| [»] scaffold0124 (1 HSPs) |
| | |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
| [»] scaffold0351 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 6985723 - 6986006
Alignment:
| Q |
1 |
taaaatgcaaaatgagcaccatgatttgatatatcacaatgatcgacaccatcaaagcctatccaagacctcaccaaaaaccataaagaaccaaagaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6985723 |
taaaatgcaaaatgagcaccatgaattgatatatcacaatgatcgacaccatcaaagcctatccaagacctcaccaaaaaccataaagaaccaaagaaac |
6985822 |
T |
|
| Q |
101 |
tgcaagacaaaaataaatgtcgtgcatcttccacgaaaccacatcatgtcacacataagcatgcctctgaattcaagataccacgatatgctaaattaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6985823 |
tgcaagacaaaaataaatgtcgtgcatcttccacgaaaccacatcctgtcacacaaaagcatgcctctgaattcaagataccatgatatgctaaattaga |
6985922 |
T |
|
| Q |
201 |
cattataggaagtctatcttgaatcaacctccaggaaaaaatagacaccttgaggggaacatgtttgtgccaaaccaattcttc |
284 |
Q |
| |
|
|||| || ||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6985923 |
cattgtatgaagtctatctcgaatcaacctccaagcaaaaatagacaccttgaggggaacatgtttgtgccaaaccaattcttc |
6986006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 8129772 - 8130055
Alignment:
| Q |
1 |
taaaatgcaaaatgagcaccatgatttgatatatcacaatgatcgacaccatcaaagcctatccaagacctcaccaaaaaccataaagaaccaaagaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8129772 |
taaaatgcaaaatgagcaccatgatttgatatatcacaatgatcgacaccatcaaagcctatccaagacctcaccaaaaaccataaagaatcaaagaaac |
8129871 |
T |
|
| Q |
101 |
tgcaagacaaaaataaatgtcgtgcatcttccacgaaaccacatcatgtcacacataagcatgcctctgaattcaagataccacgatatgctaaattaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
8129872 |
tgcaagacaaaaataaatgtcgtgcatcttccacgaaaccacaacctgttacacataagcatgcctctgaattcaagataccacgaaatattaaattaga |
8129971 |
T |
|
| Q |
201 |
cattataggaagtctatcttgaatcaacctccaggaaaaaatagacaccttgaggggaacatgtttgtgccaaaccaattcttc |
284 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8129972 |
cattgtaggaagtctatctcgaatcaacctccaagcaaaaatagacaccttgaggggaacatgtttgtgccaaaccaattcttc |
8130055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 22877784 - 22877501
Alignment:
| Q |
1 |
taaaatgcaaaatgagcaccatgatttgatatatcacaatgatcgacaccatcaaagcctatccaagacctcaccaaaaaccataaagaaccaaagaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22877784 |
taaaatgcaaaatgagcaccatgatttgatatatcacaataatccacaccatcaaagcctatccaagacctcaccaaaaaccataaagaaccaaagaaac |
22877685 |
T |
|
| Q |
101 |
tgcaagacaaaaataaatgtcgtgcatcttccacgaaaccacatcatgtcacacataagcatgcctctgaattcaagataccacgatatgctaaattaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22877684 |
tgcaagacaaaaataaatgtcgtgcatcttccacgaaaccacatcctgtcacacataagcatgcctctgaattcaagataccacgatatgctaaattaga |
22877585 |
T |
|
| Q |
201 |
cattataggaagtctatcttgaatcaacctccaggaaaaaatagacaccttgaggggaacatgtttgtgccaaaccaattcttc |
284 |
Q |
| |
|
| || |||||||||||||| ||||||||||||| | ||||||||||||||| |||| ||||||||||||||||||| ||||||| |
|
|
| T |
22877584 |
ctttgtaggaagtctatctcgaatcaacctccaagcaaaaatagacaccttaagggaaacatgtttgtgccaaacccattcttc |
22877501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 40687888 - 40688171
Alignment:
| Q |
1 |
taaaatgcaaaatgagcaccatgatttgatatatcacaatgatcgacaccatcaaagcctatccaagacctcaccaaaaaccataaagaaccaaagaaat |
100 |
Q |
| |
|
|||||||||||||| |||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
40687888 |
taaaatgcaaaatgtgcacaatgatttgaaatatcacaatgatcaacaccatcaaagcctatccaagacctcaccaacgaccataaagaaccaaagaagc |
40687987 |
T |
|
| Q |
101 |
tgcaagacaaaaataaatgtcgtgcatcttccacgaaaccacatcatgtcacacataagcatgcctctgaattcaagataccacgatatgctaaattaga |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||||| || ||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
40687988 |
tgcaagacaaaaataaatgtcgagcatcttccaataaaccacatcctgacacacataaacatgcctctgaattcaatataccacgatatgctaaattaga |
40688087 |
T |
|
| Q |
201 |
cattataggaagtctatcttgaatcaacctccaggaaaaaatagacaccttgaggggaacatgtttgtgccaaaccaattcttc |
284 |
Q |
| |
|
| || |||||||||||||| ||||||||||||| | ||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
40688088 |
ctttgtaggaagtctatctcgaatcaacctccaagcaaaaatagacaccttaaggggaacctgtttgtgccaaaccaattcttc |
40688171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 17874716 - 17874945
Alignment:
| Q |
1 |
taaaatgcaaaatgagcaccatgatttgatatatcacaatgatcgacaccatcaaagcctatccaagacctcaccaaaaaccataaagaaccaaagaaat |
100 |
Q |
| |
|
||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17874716 |
taaaatgaaaaatgagcacaatgatttgaaatatcacaatgatcgacaccatcaaagcctatccaagacctcaccaaagaccataaagaaccaaagaagc |
17874815 |
T |
|
| Q |
101 |
tgcaagacaaaaataaatgtcgtgcatcttccacgaaaccacatcatgtcacacataagcatgcctctgaattcaagataccacgatatgctaaattaga |
200 |
Q |
| |
|
|||| |||||||||||||| || |||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
17874816 |
tgcacgacaaaaataaatgacgagcatcttccacgaaaccacatcctgacacacataagcacgcctctgaattcaagataccacaatatgctaaattaga |
17874915 |
T |
|
| Q |
201 |
cattataggaagtctatcttgaatcaacct |
230 |
Q |
| |
|
|||| ||||||||| |||| ||| |||||| |
|
|
| T |
17874916 |
cattgtaggaagtcgatctcgaaacaacct |
17874945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 19163495 - 19163213
Alignment:
| Q |
1 |
taaaatgcaaaatgagcaccatgatttgatatatcacaatgatcgacaccatcaaagcctatccaagacctcaccaaaaaccataaagaaccaaagaaat |
100 |
Q |
| |
|
||||| |||||||| |||| ||||||||| || ||||||||||| |||||||||||||||||||| || |||||||| ||||||||||||||||||| |
|
|
| T |
19163495 |
taaaaagcaaaatgtgcacaatgatttgaaatgtcacaatgatcaacaccatcaaagcctatccaggatctcaccaacgaccataaagaaccaaagaagc |
19163396 |
T |
|
| Q |
101 |
tgcaagacaaaaataaatgtcgtgcatcttccacgaaaccacatcatgtcacacataagcatgcctctgaattcaagataccacgatatgctaaattaga |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| | |||||| | || ||||||||| || |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19163395 |
tgcaagacaaaaataaatgtcgagcatcttccaaaacaccacaccctgacacacataaacaagcctctgaattcaaaataccacgatatgctaaattaga |
19163296 |
T |
|
| Q |
201 |
cattataggaagtctatcttgaatcaacctccaggaaaaaatagacaccttgaggggaacatgtttgtgccaaaccaattcttc |
284 |
Q |
| |
|
| || |||||||||||||| ||||||| ||||| | ||||||||||| ||| |||||||| ||||||||||||||||| ||||| |
|
|
| T |
19163295 |
ctttgtaggaagtctatctcgaatcaatctccaagcaaaaatagaca-cttaaggggaacctgtttgtgccaaaccaaatcttc |
19163213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 23131128 - 23130969
Alignment:
| Q |
1 |
taaaatgcaaaatgagcaccatgatttgatatatcacaatgatcgacaccatcaaagcctatccaagacctcaccaaaaaccataaagaaccaaagaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
23131128 |
taaaatgcaaaatgagcaccatgatttgatatatcacaatgatccacaccatcaaagcctatccaagacctcaccaaaaaccataaagaaccaaaaaaac |
23131029 |
T |
|
| Q |
101 |
tgcaagacaaaaataaatgtcgtgcatcttccacgaaaccacatcatgtcacacataagc |
160 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
23131028 |
tgcaagacaaaaataaatatcgtgcatcttccacgaaaccgcatcctgtcacacataagc |
23130969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 274
Target Start/End: Original strand, 54684443 - 54684704
Alignment:
| Q |
13 |
tgagcaccatgatttgatatatcacaatgatcgacaccatcaaagcctatccaagacctcaccaaaaaccataaagaaccaaagaaattgcaagacaaaa |
112 |
Q |
| |
|
||||||| ||||||| | |||||||||||||| | | ||||||||| |||||||||||||| ||| |||||||||||||||| | ||||||||| || |
|
|
| T |
54684443 |
tgagcacaatgatttaaaatatcacaatgatcagccctatcaaagccaatccaagacctcactaaaggccataaagaaccaaagcatctgcaagacagaa |
54684542 |
T |
|
| Q |
113 |
ataaatgtcgtgcatcttccacgaaaccacatcatgtcacacataagcatgcctctgaattcaagataccacgatatgctaaattagacattataggaag |
212 |
Q |
| |
|
||| ||| ||||||||||||| | ||||| | || ||||||||| || |||| | ||| |||||||||||| |||||| |||||| | | ||||| |
|
|
| T |
54684543 |
atagatggcgtgcatcttccaacagtccacaacctgacacacataaacacgcctgtaaatccaagataccacgggttgctaagttagacttagtgggaag |
54684642 |
T |
|
| Q |
213 |
tctatcttgaatcaacctccaggaaaaaatagacaccttgaggggaacatgtttgtgccaaa |
274 |
Q |
| |
|
|| ||| ||| ||||| ||| | |||||||||||||| || |||||||| || ||||||| |
|
|
| T |
54684643 |
tcgatcacgaagcaaccgccaagcgaaaatagacaccttaagcggaacatgcttatgccaaa |
54684704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0750 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: scaffold0750
Description:
Target: scaffold0750; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 5872 - 6155
Alignment:
| Q |
1 |
taaaatgcaaaatgagcaccatgatttgatatatcacaatgatcgacaccatcaaagcctatccaagacctcaccaaaaaccataaagaaccaaagaaat |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5872 |
taaaatgcaaaatgagccccatgatttgatatatcacaatgatcgacaccatcaaagcctatccaagacctcaccaaaaaccataaagaaccaaagaaac |
5971 |
T |
|
| Q |
101 |
tgcaagacaaaaataaatgtcgtgcatcttccacgaaaccacatcatgtcacacataagcatgcctctgaattcaagataccacgatatgctaaattaga |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| |||||| | | |||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
5972 |
tacaagacaaaaataaatgtcgtgcatcttccacaaaaccagaacttgtcacacataagcatgcctttgaattcaagataccacgaaatgctaaattaga |
6071 |
T |
|
| Q |
201 |
cattataggaagtctatcttgaatcaacctccaggaaaaaatagacaccttgaggggaacatgtttgtgccaaaccaattcttc |
284 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6072 |
cattgtaggaagtctatctcgaatcaacctccaagcaaaaatagacaccttgaggggaacatgtttgtgccaaaccaattcttc |
6155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0124 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: scaffold0124
Description:
Target: scaffold0124; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 22234 - 22517
Alignment:
| Q |
1 |
taaaatgcaaaatgagcaccatgatttgatatatcacaatgatcgacaccatcaaagcctatccaagacctcaccaaaaaccataaagaaccaaagaaat |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22234 |
taaaatgcaaaatgagccccatgatttgatatatcacaatgatcgacaccatcaaagcctatccaagacctcaccaaaaaccataaagaaccaaagaaac |
22333 |
T |
|
| Q |
101 |
tgcaagacaaaaataaatgtcgtgcatcttccacgaaaccacatcatgtcacacataagcatgcctctgaattcaagataccacgatatgctaaattaga |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| |||||| | | |||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
22334 |
tacaagacaaaaataaatgtcgtgcatcttccacaaaaccagaacttgtcacacataagcatgcctttgaattcaagataccacgaaatgctaaattaga |
22433 |
T |
|
| Q |
201 |
cattataggaagtctatcttgaatcaacctccaggaaaaaatagacaccttgaggggaacatgtttgtgccaaaccaattcttc |
284 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22434 |
cattgtaggaagtctatctcgaatcaacctccaagcaaaaatagacaccttgaggggaacatgtttgtgccaaaccaattcttc |
22517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 13415504 - 13415787
Alignment:
| Q |
1 |
taaaatgcaaaatgagcaccatgatttgatatatcacaatgatcgacaccatcaaagcctatccaagacctcaccaaaaaccataaagaaccaaagaaat |
100 |
Q |
| |
|
||||||| ||||||||||| ||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13415504 |
taaaatgaaaaatgagcacaatgatttgaaatatcacaatgatcgacaccagcaaaacctatccaagacctcaccaaagaccataaagaaccaaagaaac |
13415603 |
T |
|
| Q |
101 |
tgcaagacaaaaataaatgtcgtgcatcttccacgaaaccacatcatgtcacacataagcatgcctctgaattcaagataccacgatatgctaaattaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13415604 |
tgcaagacaaaaataaatgtcgtgcatcttccacgaaaccacatcttgacacacataagcatgcctctgaattcaaaataccacgatatgctaaattaga |
13415703 |
T |
|
| Q |
201 |
cattataggaagtctatcttgaatcaacctccaggaaaaaatagacaccttgaggggaacatgtttgtgccaaaccaattcttc |
284 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13415704 |
cattgtaggaagtctatctcgaatcaacctccaagaaaaaatagacaccttaaggggaacatgtttgtgccaaaccaattcttc |
13415787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 4 - 284
Target Start/End: Complemental strand, 27951734 - 27951455
Alignment:
| Q |
4 |
aatgcaaaatgagcaccatgatttgatatatcacaatgatcgacaccatcaaagcctatccaagacctcaccaaaaaccataaagaaccaaagaaattgc |
103 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||| |
|
|
| T |
27951734 |
aatgcaaaatgagcgccatgatttgagatatcacaatgatcaacaccatcaaagcctatccaagaccgcaccaaaaaccataaagaaccaaaaaaactgc |
27951635 |
T |
|
| Q |
104 |
aagacaaaaataaatgtcgtgcatcttccacgaaaccacatcatgtcacacataagcatgcctctgaattcaagataccacgatatgctaaattagacat |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27951634 |
aagacaaaaataaatgtcgtgcatcttccacgaaaccacatcctgacacacataa-aatgcctctgaattcaatataccacgatatgctaaattagacat |
27951536 |
T |
|
| Q |
204 |
tataggaagtctatcttgaatcaacctccaggaaaaaatagacaccttgaggggaacatgtttgtgccaaaccaattcttc |
284 |
Q |
| |
|
| |||||||||| ||| |||||| |||||| | ||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27951535 |
tgtaggaagtctgtctcgaatcagcctccaagcaaaaataaacaccttaaggggaacatgtttgtgccaaaccaattcttc |
27951455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 6728096 - 6727813
Alignment:
| Q |
1 |
taaaatgcaaaatgagcaccatgatttgatatatcacaatgatcgacaccatcaaagcctatccaagacctcaccaaaaaccataaagaaccaaagaaat |
100 |
Q |
| |
|
|||||||||||||| |||| ||||||||| ||||| ||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6728096 |
taaaatgcaaaatgtgcacaatgatttgaaatatcgcaatgattgacactatcaaagcctatccaagacctcaccaacgaccataaagaaccaaagaagc |
6727997 |
T |
|
| Q |
101 |
tgcaagacaaaaataaatgtcgtgcatcttccacgaaaccacatcatgtcacacataagcatgcctctgaattcaagataccacgatatgctaaattaga |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||| | || ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6727996 |
tgcaagacaaaaataaatgtcgagcatcttccaataaaccacaccctgacacacataaacatgcctctgaattcaagataccacgatatgctaaattaga |
6727897 |
T |
|
| Q |
201 |
cattataggaagtctatcttgaatcaacctccaggaaaaaatagacaccttgaggggaacatgtttgtgccaaaccaattcttc |
284 |
Q |
| |
|
| || |||||||||||||| ||||||||||||| | ||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
6727896 |
ctttgtaggaagtctatctcgaatcaacctccaagcaaaaatagacaccttaaggggaacctgtttgtgccaaaccaattcttc |
6727813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 2208141 - 2207864
Alignment:
| Q |
1 |
taaaatgcaaaatgagcaccatgatttgatatatcacaatgatcgacaccatcaaagcctatccaagacctcaccaaaaaccataaagaaccaaagaaat |
100 |
Q |
| |
|
||||| |||||||| |||||||||||||| || || |||||||| ||||||||||| ||||||||||| ||||||| |||||| ||||||| || |
|
|
| T |
2208141 |
taaaaagcaaaatgtgcaccatgatttgagatgtcgcaatgatcaacaccatcaaaacctatccaagatctcaccagcggccataataaaccaaaaaatc |
2208042 |
T |
|
| Q |
101 |
tgcaagacaaaaataaatgtcgtgcatcttccacgaaaccacatcatgtcacacataagcatgcctctgaattcaagataccacgatatgctaaattaga |
200 |
Q |
| |
|
|||||||||||||||||||||| || ||||||| || ||||| | || ||||||||| |||||||||||| |||| |||||||| | |||||||| || |
|
|
| T |
2208041 |
tgcaagacaaaaataaatgtcgagcgtcttccaataatccacaccctgacacacataaacatgcctctgaactcaaaataccacgggaagctaaattgga |
2207942 |
T |
|
| Q |
201 |
cattataggaagtctatcttgaatcaacctccaggaaaaaatagacaccttgaggggaacatgtttgtgccaaaccaa |
278 |
Q |
| |
|
| | |||| ||||| ||| ||||||| ||||| | ||||||||||||||| || ||||| ||||||||||||||||| |
|
|
| T |
2207941 |
cttggtagggagtctgtctcgaatcaatctccaagcaaaaatagacaccttaagaggaacctgtttgtgccaaaccaa |
2207864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 36931018 - 36931138
Alignment:
| Q |
13 |
tgagcaccatgatttgatatatcacaatgatcgacaccatcaaagcctatccaagacctcaccaaaaaccataaagaaccaaagaaattgcaagacaaaa |
112 |
Q |
| |
|
||||||| ||||||| | |||||||||||||| | ||||||||||| |||||||||||||| ||| |||||||||||||||| ||||||||||||| |
|
|
| T |
36931018 |
tgagcacaatgatttaaaatatcacaatgatcagccccatcaaagccaatccaagacctcactaaaggccataaagaaccaaagtcgttgcaagacaaaa |
36931117 |
T |
|
| Q |
113 |
ataaatgtcgtgcatcttcca |
133 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
36931118 |
atagatgtcgtgcatcttcca |
36931138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 4 - 284
Target Start/End: Complemental strand, 45124 - 44845
Alignment:
| Q |
4 |
aatgcaaaatgagcaccatgatttgatatatcacaatgatcgacaccatcaaagcctatccaagacctcaccaaaaaccataaagaaccaaagaaattgc |
103 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||| |
|
|
| T |
45124 |
aatgcaaaatgagcgccatgatttgagatatcacaatgatcaacaccatcaaagcctatccaagaccgcaccaaaaaccataaagaaccaaaaaaactgc |
45025 |
T |
|
| Q |
104 |
aagacaaaaataaatgtcgtgcatcttccacgaaaccacatcatgtcacacataagcatgcctctgaattcaagataccacgatatgctaaattagacat |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
45024 |
aagacaaaaataaatgtcgtgcatcttccacgaaaccacatcctgacacacataa-aatgcctctgaattcaatataccacgatatgctaaattagacat |
44926 |
T |
|
| Q |
204 |
tataggaagtctatcttgaatcaacctccaggaaaaaatagacaccttgaggggaacatgtttgtgccaaaccaattcttc |
284 |
Q |
| |
|
| |||||||||| ||| |||||| |||||| | ||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
44925 |
tgtaggaagtctgtctcgaatcagcctccaagcaaaaataaacaccttaaggggaacatgtttgtgccaaaccaattcttc |
44845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 4311153 - 4310871
Alignment:
| Q |
1 |
taaaatgcaaaatgagcaccatgatttgatatatcacaatgatcgacaccatcaaagcctatccaagacctcaccaaaaaccataaagaaccaaagaaat |
100 |
Q |
| |
|
|||||||||||||| |||| ||||||||| |||||||||||||| |||||||||||| |||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
4311153 |
taaaatgcaaaatgtgcacaatgatttgaaatatcacaatgatcaacaccatcaaagtctatccaagatctcaccaatgaccataaagaaccaaagaagc |
4311054 |
T |
|
| Q |
101 |
tgcaagacaaaaataaatgtcgtgcatcttccacgaaaccacatcatgtcacacataagcatgcctctgaattcaagataccacgatatgctaaattaga |
200 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||| |||||||| | | ||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4311053 |
tgaaagacaaaaataaatgtcgagcatcttccaataaaccacaccctaacacacataaacatgcctctgaattcaaaataccacgatatgctaaattaga |
4310954 |
T |
|
| Q |
201 |
cattataggaagtctatcttgaatcaacctccaggaaaaaatagacaccttgaggggaacatgtttgtgccaaaccaattctt |
283 |
Q |
| |
|
| || |||||||||||||| |||||| ||||| | ||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
4310953 |
ctttgtaggaagtctatctcaaatcaatctccaagcaaaaatagacaccttaaggggaacctgtttgtgccaaaccaattctt |
4310871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 8564976 - 8564794
Alignment:
| Q |
1 |
taaaatgcaaaatgagcaccatgatttgatatatcacaatgatcgacaccatcaaagcctatccaagacctcaccaaaaaccataaagaaccaaagaaat |
100 |
Q |
| |
|
||||| |||||||| |||| ||||||||| || ||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
8564976 |
taaaaagcaaaatgtgcacaatgatttgaaatgtcacaatgatcaacaccatcaaagcctatccaagatctcaccaatgaccataaagaaccaaagaagc |
8564877 |
T |
|
| Q |
101 |
tgcaagacaaaaataaatgtcgtgcatcttccacgaaaccacatcatgtcacacataagcatgcctctgaattcaagatacca |
183 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||| | || ||||||| | ||||||||||||||||| |||||| |
|
|
| T |
8564876 |
tgcaagacaaaaataaatgtcgagcatcttccaaaaaaccacaccctgacacacattaacatgcctctgaattcaaaatacca |
8564794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 39297878 - 39297736
Alignment:
| Q |
1 |
taaaatgcaaaatgagcaccatgatttgatatatcacaatgatcgacaccatcaaagcctatccaagacctcaccaaaaaccataaagaaccaaagaaat |
100 |
Q |
| |
|
||||||| ||||||||||| ||||||| | ||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
39297878 |
taaaatgaaaaatgagcacaatgatttaaaatatcacaatgatcgtcaccatcaaagcatatccaagacctcaccaaagaccataaagaaccaaagaagc |
39297779 |
T |
|
| Q |
101 |
tgcaagacaaaaataaatgtcgtgcatcttccacgaaaccaca |
143 |
Q |
| |
|
|||| || |||| |||| | || |||||||||| |||||||| |
|
|
| T |
39297778 |
tgcacgaaaaaattaaacgacgaacatcttccacaaaaccaca |
39297736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 35029267 - 35029319
Alignment:
| Q |
225 |
caacctccaggaaaaaatagacaccttgaggggaacatgtttgtgccaaacca |
277 |
Q |
| |
|
||||||||| | ||||||||| ||||| || ||||||||||| |||||||||| |
|
|
| T |
35029267 |
caacctccaagcaaaaatagaaaccttaagtggaacatgtttatgccaaacca |
35029319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 35837030 - 35837310
Alignment:
| Q |
1 |
taaaatgcaaaatgagcaccatgatttgatatatcacaatgatcgacaccatcaaagcctatccaagacctcaccaaaaaccataaagaaccaaagaaat |
100 |
Q |
| |
|
||||||| ||||||||||| ||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||| |||||| ||||||||||| | |
|
|
| T |
35837030 |
taaaatgaaaaatgagcacaatgatttgaaatatcacaatgatcggcaccaacaaagcctatccaagacctcaccaaaggccataatgaaccaaagaatt |
35837129 |
T |
|
| Q |
101 |
tgcaagacaaaaataaatgtcgtgcatcttccacgaaaccacatcatgtcacacataagcatgcctctgaattcaagataccacgatatgctaaattaga |
200 |
Q |
| |
|
|||| |||||||| ||||| | ||||||||||| | |||||| | || |||||||||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35837130 |
tgcaggacaaaaagaaatggtgagcatcttccacaagaccacaccctgacacacataagcacgcctctgaatccaagataccacgatatgctaaattaga |
35837229 |
T |
|
| Q |
201 |
cattataggaagtctatcttgaatcaacctccaggaaaaaatagacaccttgaggggaacatgtttgtgccaaaccaattc |
281 |
Q |
| |
|
| || ||||||||| ||| ||||||||||||| | ||||||||||||||| || ||||| |||||||||||||||||||| |
|
|
| T |
35837230 |
ctttgtaggaagtcgatcgcgaatcaacctccaagcaaaaatagacaccttaagcggaacctgtttgtgccaaaccaattc |
35837310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 36255600 - 36255883
Alignment:
| Q |
1 |
taaaatgcaaaatgagcaccatgatttgatatatcacaatgatcgacaccatcaaagcctatccaagacctcaccaaaaaccataaagaaccaaagaaat |
100 |
Q |
| |
|
||||||| |||||| | || ||||||||| |||||||||||||| ||||||| ||| ||||||||||| |||| ||| ||||||||| ||||||||| | |
|
|
| T |
36255600 |
taaaatgtaaaatgtgaacaatgatttgaaatatcacaatgatcaacaccattaaaacctatccaagatctcatcaacgaccataaagtaccaaagaagt |
36255699 |
T |
|
| Q |
101 |
tgcaagacaaaaataaatgtcgtgcatcttccacgaaaccacatcatgtcacacataagcatgcctctgaattcaagataccacgatatgctaaattaga |
200 |
Q |
| |
|
|||| ||||||||||||||||| || |||| || |||||||| | || ||||||||| || |||||||||||||| || |||||||||||||||||||| |
|
|
| T |
36255700 |
tgcaggacaaaaataaatgtcgagcgtctttcaaaaaaccacaccctgacacacataaacaagcctctgaattcaaaatcccacgatatgctaaattaga |
36255799 |
T |
|
| Q |
201 |
cattataggaagtctatcttgaatcaacctccaggaaaaaatagacaccttgaggggaacatgtttgtgccaaaccaattcttc |
284 |
Q |
| |
|
| || |||| ||||||||| ||||||| ||||| | ||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
36255800 |
ctttgtagggagtctatctcgaatcaatctccaagcaaaaatagacaccttaaggggaacctgtttgtgccaaaccaattcttc |
36255883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0351 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: scaffold0351
Description:
Target: scaffold0351; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 13311 - 13034
Alignment:
| Q |
1 |
taaaatgcaaaatgagcaccatgatttgatatatcacaatgatcgacaccatcaaagcctatccaagacctcaccaaaaaccataaagaaccaaagaaat |
100 |
Q |
| |
|
||||| |||||||| |||| ||||||||| || ||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| ||||||| |
|
|
| T |
13311 |
taaaaagcaaaatgtgcacaatgatttgaaatgtcacaatgatcaacaccatcaaagcctatccaagatctcaccaatgaccataaagaatcaaagaagc |
13212 |
T |
|
| Q |
101 |
tgcaagacaaaaataaatgtcgtgcatcttccacgaaaccacatcatgtcacacataagcatgcctctgaattcaagataccacgatatgctaaattaga |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||| | || ||||||||| |||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
13211 |
tgcaagacaaaaataaatgtcgagcatcttccaaaaaaccacaccctgacacacataaacatgcctctgtattcaaaataccacgatatgctaaattaga |
13112 |
T |
|
| Q |
201 |
cattataggaagtctatcttgaatcaacctccaggaaaaaatagacaccttgaggggaacatgtttgtgccaaaccaa |
278 |
Q |
| |
|
| || |||||||||||||| ||||||| ||||| | |||||||| ||||| ||||| || ||||||||||||||||| |
|
|
| T |
13111 |
ctttgtaggaagtctatctcgaatcaatctccaagcgaaaatagagaccttaagggggacctgtttgtgccaaaccaa |
13034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 148; Significance: 4e-78; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 45165878 - 45165595
Alignment:
| Q |
1 |
taaaatgcaaaatgagcaccatgatttgatatatcacaatgatcgacaccatcaaagcctatccaagacctcaccaaaaaccataaagaaccaaagaaat |
100 |
Q |
| |
|
||||| |||||||| |||| ||||||||| || ||||||||||| |||||||||||||||||||| || |||||||| ||||||||||| ||||||| |
|
|
| T |
45165878 |
taaaaagcaaaatgtgcacaatgatttgaaatgtcacaatgatcaacaccatcaaagcctatccaggatctcaccaacgaccataaagaagcaaagaagc |
45165779 |
T |
|
| Q |
101 |
tgcaagacaaaaataaatgtcgtgcatcttccacgaaaccacatcatgtcacacataagcatgcctctgaattcaagataccacgatatgctaaattaga |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||| | | ||||||||| ||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
45165778 |
tgcaagacaaaaataaatgtcgagcatcttccaataaaccacaccctaacacacataaacatgcctctgaattcaaaatatcacgatatgctaaattaga |
45165679 |
T |
|
| Q |
201 |
cattataggaagtctatcttgaatcaacctccaggaaaaaatagacaccttgaggggaacatgtttgtgccaaaccaattcttc |
284 |
Q |
| |
|
| || |||||||||||||| ||||||| ||||| | ||||||| ||||||| |||||||| | ||||||||||||||| ||||| |
|
|
| T |
45165678 |
ctttgtaggaagtctatctcgaatcaatctccaagcaaaaataaacaccttaaggggaacctctttgtgccaaaccaaatcttc |
45165595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 39694292 - 39694569
Alignment:
| Q |
1 |
taaaatgcaaaatgagcaccatgatttgatatatcacaatgatcgacaccatcaaagcctatccaagacctcaccaaaaaccataaagaaccaaagaaat |
100 |
Q |
| |
|
||||| |||||||| ||||||||||||||||| || |||||||| ||||||||||| ||||||||||| ||||||| |||||| ||||||| || |
|
|
| T |
39694292 |
taaaaagcaaaatgtgcaccatgatttgatatgtcgcaatgatcaacaccatcaaaacctatccaagatctcaccagcggccataataaaccaaaaaatc |
39694391 |
T |
|
| Q |
101 |
tgcaagacaaaaataaatgtcgtgcatcttccacgaaaccacatcatgtcacacataagcatgcctctgaattcaagataccacgatatgctaaattaga |
200 |
Q |
| |
|
|||||||||||||||||||||| || ||||||| |||||||| | || ||||||||| |||||||||||| |||| |||||||| | |||||||| || |
|
|
| T |
39694392 |
tgcaagacaaaaataaatgtcgagcgtcttccaataaaccacaccctgacacacataaacatgcctctgaactcaaaataccacgggaagctaaattgga |
39694491 |
T |
|
| Q |
201 |
cattataggaagtctatcttgaatcaacctccaggaaaaaatagacaccttgaggggaacatgtttgtgccaaaccaa |
278 |
Q |
| |
|
| | |||| ||||| ||| ||||||| ||||| | ||||||||||||||| || ||||| ||||||||||||||||| |
|
|
| T |
39694492 |
cttggtagggagtctgtctcgaatcaatctccaagcaaaaatagacaccttaagaggaacctgtttgtgccaaaccaa |
39694569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 278
Target Start/End: Complemental strand, 6343947 - 6343682
Alignment:
| Q |
13 |
tgagcaccatgatttgatatatcacaatgatcgacaccatcaaagcctatccaagacctcaccaaaaaccataaagaaccaaagaaattgcaagacaaaa |
112 |
Q |
| |
|
||||||| ||||||| | |||||||||||||| || ||||||||||| |||||||||||||| ||| |||||||| ||||||| | |||||||||||| |
|
|
| T |
6343947 |
tgagcacaatgatttaaaatatcacaatgatcaaccccatcaaagccaatccaagacctcactaaaggccataaagtaccaaagtagctgcaagacaaaa |
6343848 |
T |
|
| Q |
113 |
ataaatgtcgtgcatcttccacgaaaccacatcatgtcacacataagcatgcctctgaattcaagataccacgatatgctaaattagacattataggaag |
212 |
Q |
| |
|
||| ||||||||||||||||| || ||||| | || |||||||| || ||| ||| ||| ||||||| |||||| |||||| | | ||||| |
|
|
| T |
6343847 |
atagatgtcgtgcatcttccatcaagccacaccctgatacacataaacacacctgaaaatccaaaataccacaggttgctaagttagacttagtgggaag |
6343748 |
T |
|
| Q |
213 |
tctatcttgaatcaacctccaggaaaaaatagacaccttgaggggaacatgtttgtgccaaaccaa |
278 |
Q |
| |
|
|| ||| ||| ||||| ||| | ||||||||||||||| | |||||||| || ||||||||||| |
|
|
| T |
6343747 |
tcgatcacgaagcaaccgccaagcaaaaatagacaccttaatcggaacatgcttatgccaaaccaa |
6343682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 28633560 - 28633372
Alignment:
| Q |
13 |
tgagcaccatgatttgatatatcacaatgatcgacaccatcaaagcctatccaagacctcaccaaaaaccataaagaaccaaagaaattgcaagacaaaa |
112 |
Q |
| |
|
||||||| ||||||| | ||||||||||||||| | |||||||||| |||||||||||||| ||| ||||||||| |||||| | |||||||||||| |
|
|
| T |
28633560 |
tgagcacaatgatttaaaatatcacaatgatcggcctcatcaaagccaatccaagacctcactaaaggccataaagagccaaagcatctgcaagacaaaa |
28633461 |
T |
|
| Q |
113 |
ataaatgtcgtgcatcttccacgaaaccacatcatgtcacacataagcatgcctctgaattcaagataccacgatatgctaaattagac |
201 |
Q |
| |
|
||||||| || |||||||||| || |||||| | || |||||| ||||| |||| | || |||||||||||| | ||||||||||||| |
|
|
| T |
28633460 |
ataaatggcgcgcatcttccaagagaccacaacctgacacacacaagcacgcctgagcatccaagataccacggtttgctaaattagac |
28633372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 15602157 - 15602277
Alignment:
| Q |
13 |
tgagcaccatgatttgatatatcacaatgatcgacaccatcaaagcctatccaagacctcaccaaaaaccataaagaaccaaagaaattgcaagacaaaa |
112 |
Q |
| |
|
||||||| ||||||| | |||||||||||||| | ||||||||||| |||||||||||||| ||| |||||||||||||||| | |||||||||||| |
|
|
| T |
15602157 |
tgagcacaatgatttaaaatatcacaatgatcagccccatcaaagccaatccaagacctcactaaaggccataaagaaccaaagtagctgcaagacaaaa |
15602256 |
T |
|
| Q |
113 |
ataaatgtcgtgcatcttcca |
133 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
15602257 |
atagatgtcgtgcatcttcca |
15602277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 278
Target Start/End: Complemental strand, 30713186 - 30712921
Alignment:
| Q |
13 |
tgagcaccatgatttgatatatcacaatgatcgacaccatcaaagcctatccaagacctcaccaaaaaccataaagaaccaaagaaattgcaagacaaaa |
112 |
Q |
| |
|
||||||| ||||||| | |||||||||||||| | |||||||||| |||||||||||||| ||| |||||||||||||||| | ||||||||| || |
|
|
| T |
30713186 |
tgagcacaatgatttaaaatatcacaatgatcagcctcatcaaagccaatccaagacctcactaaaggccataaagaaccaaagcatctgcaagacagaa |
30713087 |
T |
|
| Q |
113 |
ataaatgtcgtgcatcttccacgaaaccacatcatgtcacacataagcatgcctctgaattcaagataccacgatatgctaaattagacattataggaag |
212 |
Q |
| |
|
||| ||| |||||||||||| | ||||| | || ||||||||| || |||| | ||| ||||||||||| | |||| |||||| | | ||||| |
|
|
| T |
30713086 |
atatatggtgtgcatcttccaacagtccacaacctgacacacataaacacgcctgtaaatccaagataccacaggttactaagttagacttagtgggaag |
30712987 |
T |
|
| Q |
213 |
tctatcttgaatcaacctccaggaaaaaatagacaccttgaggggaacatgtttgtgccaaaccaa |
278 |
Q |
| |
|
|| ||| ||| ||||| ||| | |||||||||||||| || |||||||| || ||||||||||| |
|
|
| T |
30712986 |
tcgatcacgaagcaaccgccaagcgaaaatagacaccttaagcggaacatgcttatgccaaaccaa |
30712921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 45270286 - 45270339
Alignment:
| Q |
225 |
caacctccaggaaaaaatagacaccttgaggggaacatgtttgtgccaaaccaa |
278 |
Q |
| |
|
||||||||| | ||||||||| ||||| || |||||||| |||||||||||||| |
|
|
| T |
45270286 |
caacctccaagcaaaaatagagaccttaagcggaacatggttgtgccaaaccaa |
45270339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 28381800 - 28381852
Alignment:
| Q |
35 |
cacaatgatcgacaccatcaaagcctatccaagacctcaccaaaaaccataaa |
87 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||| ||||||||| ||||||| |
|
|
| T |
28381800 |
cacaatgatcagcaccatcaaagcatatccaagatctcaccaaaggccataaa |
28381852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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