View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16688_low_54 (Length: 294)

Name: NF16688_low_54
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16688_low_54
NF16688_low_54
[»] chr7 (8 HSPs)
chr7 (1-284)||(6094780-6095063)
chr7 (48-247)||(6089442-6089641)
chr7 (40-112)||(6180990-6181062)
chr7 (47-111)||(6208580-6208644)
chr7 (40-112)||(6213424-6213496)
chr7 (40-128)||(6237872-6237960)
chr7 (40-241)||(6247811-6248012)
chr7 (48-111)||(6106613-6106676)


Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-150; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 6094780 - 6095063
Alignment:
Q  1 ctgaaattggaagaaacgttgatcaaaaacacattgtcgaaagttcctttccttttgacttcattctccacaagagttgcaagtaaagtttttcccactc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6094780 ctgaaattggaagaaacgttgatcaaaaacacattgtcgaaagttcctttcctttttacttcattctccacaagagttgcaagtaaagtttttcccactc 6094879  T
Q  101 ctcccattccatggataccaataacaaatacatcgtcttcctctagaagtctcaacacttggtcgatatttatgtataatgtttctccaacaaattcagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6094880 ctcccattccatggataccaataacaaatacatcgtcttcctctagaagtctcaacacttggtcgatatttatgtataatgtttctccaacaaattcagt 6094979  T
Q  201 tgacaaaatgagaggcttttctttcttgtgtagtttcatatctttgatcaatttatttacctcaacgtcatttaaattattcat 284  Q
     |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6094980 cgacaaaatgagaggcttttctttcttgtgtcgtttcatatctttgatcaatttatttacctcaatgtcatttaaattattcat 6095063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 48 - 247
Target Start/End: Original strand, 6089442 - 6089641
Alignment:
Q  48 tttccttttgacttcattctccacaagagttgcaagtaaagtttttcccactcctcccattccatggataccaataacaaatacatcgtcttcctctaga 147  Q
    ||||||||| ||||||||||| || ||||||||||||||||||||||||||||| ||||||||||  |||||||||||||| || | ||| |||||||||    
T  6089442 tttcctttttacttcattctcgacgagagttgcaagtaaagtttttcccactccccccattccatatataccaataacaaaaacttggtcatcctctaga 6089541  T
Q  148 agtctcaacacttggtcgatatttatgtataatgtttctccaacaaattcagttgacaaaatgagaggcttttctttcttgtgtagtttcatatctttga 247  Q
    ||| | | |||||    |||||| | || ||||| ||  ||||||||||| || |||||| ||||||| ||||||| ||||||| |||||||||||||||    
T  6089542 agtttaagcactttcctgatattaaagtctaatgctttcccaacaaattctgtcgacaaagtgagaggtttttcttccttgtgtcgtttcatatctttga 6089641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 6180990 - 6181062
Alignment:
Q  40 aaagttcctttccttttgacttcattctccacaagagttgcaagtaaagtttttcccactcctcccattccat 112  Q
    |||||| |||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  6180990 aaagttgctttcctttttacttcattctccacgagagttgcaagtaaagtttttcctactcctcccattccat 6181062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 6208580 - 6208644
Alignment:
Q  47 ctttccttttgacttcattctccacaagagttgcaagtaaagtttttcccactcctcccattcca 111  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6208580 ctttcctttttacttcattctccacaagagttgcaagtaaagtttttccgactcctcccattcca 6208644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 6213424 - 6213496
Alignment:
Q  40 aaagttcctttccttttgacttcattctccacaagagttgcaagtaaagtttttcccactcctcccattccat 112  Q
    |||||| |||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  6213424 aaagttgctttcctttttacttcattttccacgagagttgcaagtaaagtttttcccactcctcccattccat 6213496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 40 - 128
Target Start/End: Original strand, 6237872 - 6237960
Alignment:
Q  40 aaagttcctttccttttgacttcattctccacaagagttgcaagtaaagtttttcccactcctcccattccatggataccaataacaaa 128  Q
    |||||| |||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||   || |||||||||||    
T  6237872 aaagttgctttcctttttacttcattctccacgagagttgcaagtaaagtttttccgactcctcccattccacatatgccaataacaaa 6237960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 40 - 241
Target Start/End: Original strand, 6247811 - 6248012
Alignment:
Q  40 aaagttcctttccttttgacttcattctccacaagagttgcaagtaaagtttttcccactcctcccattccatggataccaataacaaatacatcgtctt 139  Q
    |||||| |||||||||| |||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||  || ||||| ||||| || |  || |    
T  6247811 aaagttgctttcctttttacttcattctccacgagagttgcatgtaaagtttttcctactcctcccattccatatatgccaatgacaaagactttatcat 6247910  T
Q  140 cctctagaagtctcaacacttggtcgatatttatgtataatgtttctccaacaaattcagttgacaaaatgagaggcttttctttcttgtgtagtttcat 239  Q
    | || ||  || |||||||||  | ||| |||   | |||| |  | || |||||||||||||||||| ||| |||||| | |||||||||| |||||||    
T  6247911 cgtcaagttgtttcaacactttatggattttttcatctaatctccccccgacaaattcagttgacaaagtgaaaggcttctttttcttgtgtcgtttcat 6248010  T
Q  240 at 241  Q
    ||    
T  6248011 at 6248012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 6106613 - 6106676
Alignment:
Q  48 tttccttttgacttcattctccacaagagttgcaagtaaagtttttcccactcctcccattcca 111  Q
    |||||||||  |||| |||||||| |||||||||||||||||||||||||| ||||||||||||    
T  6106613 tttcctttttccttccttctccacgagagttgcaagtaaagtttttcccacacctcccattcca 6106676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University