View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16688_low_55 (Length: 293)
Name: NF16688_low_55
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 36369082 - 36369363
Alignment:
| Q |
1 |
taattgtgacccttttaactttgacgactttaagtgcacttgtttacttggttttgaagcaaaa-tttccacgtgattggtatgag-tagagatgggtcg |
98 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
36369082 |
taattgtgacctttttaactttgaagactttaagtgcacttgtttacttggttttgaagcaaaaatttccacgtgattggtatgagatagagatgggtcg |
36369181 |
T |
|
| Q |
99 |
ggagggtgtgtaaggaagaaaggtgtatcggtttgtgggaatggagaagggtttgtcaaagttgtgagcttgaaagttcctgatacatctgtggcggttg |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36369182 |
ggagggtgtgtaaggaagaaaggtgtatcggtttgtgggaatggagaagggtttgtcaaagttgtgagcttgaaagttcccgatacatctgtggcggttg |
36369281 |
T |
|
| Q |
199 |
ctaaaggtggtttgagtttggaagaatgtgaggaagaatgcttgagaaactgctcttgtactgcctatgcagttgctgatgt |
280 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36369282 |
ctaaaggtggtttgagtttggaagaatgtgagaaagaatgcttgagaaactgctcttgtactgcctatgcagttgctgatgt |
36369363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 36404373 - 36404654
Alignment:
| Q |
1 |
taattgtgacccttttaactttgacgactttaagtgcacttgtttacttggttttgaagcaaaatttccacgtgattggtatgag--tagagatgggtcg |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
36404373 |
taattgtgacccttttaactttgacgactttaagtgcacttgtttacttggttttgaaccaaaatttccacgtgattggtatgagagtagagatgggtcg |
36404472 |
T |
|
| Q |
99 |
ggagggtgtgtaaggaagaaaggtgtatcggtttgtgggaatggagaagggtttgtcaaagttgtgagcttgaaagttcctgatacatctgtggcggttg |
198 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||||||||||||| | |||||||| || |||||||| |||||| ||||| || |||| |
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| T |
36404473 |
ggagggtgtgtaaggaagaaaggtgcatctatttgtgggaatggagaagggtttataaaagttgtaagtgtgaaagttgctgatatatctggagcagttg |
36404572 |
T |
|
| Q |
199 |
ctaaaggtggtttgagtttggaagaatgtgaggaagaatgcttgagaaactgctcttgtactgcctatgcagttgctgatgt |
280 |
Q |
| |
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| | || ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
36404573 |
ccatagatggtttgagtttggaagaatgtgagaaagaatgcttgagaaattgctcttgtactgcctatgcagttgctgatgt |
36404654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 5 - 280
Target Start/End: Original strand, 36373705 - 36373982
Alignment:
| Q |
5 |
tgtgacccttttaactttgacgactttaagtgcacttgtttacttggttttgaagcaaaatttccacgtgattggtatgagt--agagatgggtcgggag |
102 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| |||||| ||| ||||||||| |||||||||||||||||||||||||| ||||||||||| |||| |
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|
| T |
36373705 |
tgtgaccctttgaactttgaggactttaagtgtacttgtctaccaggttttgaaccaaaatttccacgtgattggtatgagagaagagatgggtcaggag |
36373804 |
T |
|
| Q |
103 |
ggtgtgtaaggaagaaaggtgtatcggtttgtgggaatggagaagggtttgtcaaagttgtgagcttgaaagttcctgatacatctgtggcggttgctaa |
202 |
Q |
| |
|
||||||||||||||||||| | ||| ||||| ||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||| ||| |||| |
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| T |
36373805 |
ggtgtgtaaggaagaaaggcgcatctatttgtcggaatggagaagggtttatcaaagttgcaagcttgaaagttcctgatatatctgtggcagttactaa |
36373904 |
T |
|
| Q |
203 |
aggtggtttgagtttggaagaatgtgaggaagaatgcttgagaaactgctcttgtactgcctatgcagttgctgatgt |
280 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
36373905 |
aggtggtctgagtttggaagaatgcgaggaagaatgcttgagaaactgctcttgtacttcctatgcagttgctgatgt |
36373982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 36387660 - 36387942
Alignment:
| Q |
1 |
taattgtgacccttttaactttgacgactttaagtgcacttgtttacttggttttgaagcaaaatttccacgtgattggtatgag--taga-gatgggtc |
97 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||| | ||||||||||||||||||||| || |||| |||||| | |
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|
| T |
36387660 |
taattgtgacccttttaactttgatgactttaagtgttcttgtttacttggttatgaacccaaatttccacgtgattggtatcagaatagaagatgggac |
36387759 |
T |
|
| Q |
98 |
gggagggtgtgtaaggaagaaaggtgtatcggtttgtgggaatggagaagggtttgtcaaagttgtgagcttgaaagttcctgatacatctgtggcggtt |
197 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||| |
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|
| T |
36387760 |
gggagggtgtgtaaggaagaaaggctcgtctgtttgtgagaatggagaagggtttatcaaagttgtaagcttgaaagttcctgatacatctgtggcagtt |
36387859 |
T |
|
| Q |
198 |
gctaaaggtggtttgagtttggaagaatgtgaggaagaatgcttgagaaactgctcttgtactgcctatgcagttgctgatgt |
280 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||| || |||||||||| |
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|
| T |
36387860 |
gctaaaagtggtttgagtttggaagaatgtgagaaagaatgcttgcaaaactgttcttgtactgcctattcaattgctgatgt |
36387942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 36397440 - 36397721
Alignment:
| Q |
1 |
taattgtgacccttttaactttgacgactttaagtgcacttgtttacttggttttgaagcaaaatttccacgtgattggtatgag--tagagatgggtcg |
98 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||| ||||||||||| | |||||||||||| ||||||||||||| |
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|
| T |
36397440 |
taattgtgaccctttgaactttgagaactttaagtgcacgtgtttacttggttttgaaccaaaatttccaagcgattggtatgagagtagagatgggtcg |
36397539 |
T |
|
| Q |
99 |
ggagggtgtgtaaggaagaaaggtgtatcggtttgtgggaatggagaagggtttgtcaaagttgtgagcttgaaagttcctgatacatctgtggcggttg |
198 |
Q |
| |
|
||||||||||||||||||||||||| ||| || ||||||||||| ||||||||| |||||||||| ||||||||||||||||||| ||||| ||| ||| |
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|
| T |
36397540 |
ggagggtgtgtaaggaagaaaggtgcatctgtctgtgggaatggcgaagggtttatcaaagttgtaagcttgaaagttcctgatatatctggggcagtta |
36397639 |
T |
|
| Q |
199 |
ctaaaggtggtttgagtttggaagaatgtgaggaagaatgcttgagaaactgctcttgtactgcctatgcagttgctgatgt |
280 |
Q |
| |
|
| | || ||||||||||||||| ||||||||| |||||||||||||||||||||| |||||| |||||||||| || ||||| |
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|
| T |
36397640 |
ccatagatggtttgagtttggatgaatgtgagaaagaatgcttgagaaactgctcctgtacttcctatgcagtagccgatgt |
36397721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 36411687 - 36411968
Alignment:
| Q |
1 |
taattgtgacccttttaactttgacgactttaagtgcacttgtttacttggttttgaagcaaaatttccacgtgattggtatgag--tagagatgggtcg |
98 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| | |
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| T |
36411687 |
taattgtgaccctttgaactttgagagctttaagtgtacttgtttacttggttttgaaccaaaatttccacgtgattggtatgagagtagagatgggttg |
36411786 |
T |
|
| Q |
99 |
ggagggtgtgtaaggaagaaaggtgtatcggtttgtgggaatggagaagggtttgtcaaagttgtgagcttgaaagttcctgatacatctgtggcggttg |
198 |
Q |
| |
|
||||| |||||||| || | ||||| ||| |||||||||||||||||||||||| ||||||| | || ||||||||||||||| ||||| ||| |||| |
|
|
| T |
36411787 |
ggaggatgtgtaagaaaaagaggtgcatctgtttgtgggaatggagaagggtttaacaaagttttaagggtgaaagttcctgatatatctggggcagttg |
36411886 |
T |
|
| Q |
199 |
ctaaaggtggtttgagtttggaagaatgtgaggaagaatgcttgagaaactgctcttgtactgcctatgcagttgctgatgt |
280 |
Q |
| |
|
| | || |||||||| |||||||||||||||| |||| |||||||||||||| ||||||| ||||||||||||||||||||| |
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|
| T |
36411887 |
ccatagatggtttgactttggaagaatgtgagaaagattgcttgagaaactgttcttgtaatgcctatgcagttgctgatgt |
36411968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 36417018 - 36417299
Alignment:
| Q |
1 |
taattgtgacccttttaactttgacgactttaagtgcacttgtttacttggttttgaagcaaaatttccacgtgattggtatgag--tagagatgggtcg |
98 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
36417018 |
taattgtgaccctttgaactttgagagctttaagtgtacttgtttacttggttttgaaccaaaatttccacgtgattggtatgagagtagagatgggttg |
36417117 |
T |
|
| Q |
99 |
ggagggtgtgtaaggaagaaaggtgtatcggtttgtgggaatggagaagggtttgtcaaagttgtgagcttgaaagttcctgatacatctgtggcggttg |
198 |
Q |
| |
|
||||| |||||||| || | ||||| ||| |||||||||||||||||||||||| ||||||| | || ||||||||||||||| ||||| ||| |||| |
|
|
| T |
36417118 |
ggaggatgtgtaagaaaaagaggtgcatctgtttgtgggaatggagaagggtttaacaaagttttaagggtgaaagttcctgatatatctggggcagttg |
36417217 |
T |
|
| Q |
199 |
ctaaaggtggtttgagtttggaagaatgtgaggaagaatgcttgagaaactgctcttgtactgcctatgcagttgctgatgt |
280 |
Q |
| |
|
| | || |||||||| |||||||||||||||| |||| |||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
36417218 |
ccatagatggtttgactttggaagaatgtgagaaagattgcttgagaaactgttcttgtaatgcctatgcagttgctgatgt |
36417299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 36425853 - 36426131
Alignment:
| Q |
1 |
taattgtgacccttttaactttgacgactttaagtgcacttgtttacttggttttgaagcaaaatttccacgtgattggtatgag--tagagatgggtcg |
98 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||| ||||||||||||||||| ||| ||||||||||||| |||||||||||| | |||||||||| |
|
|
| T |
36425853 |
taattgtgaccctttgaactttgagaactttaagtgtacttgtttacttggtttcgaaccaaaatttccacgagattggtatgagagtcgagatgggtca |
36425952 |
T |
|
| Q |
99 |
ggagggtgtgtaaggaagaaaggtgtatcggtttgtgggaatggagaagggtttgtcaaagttgtgagcttgaaagttcctgatacatctgtggcggttg |
198 |
Q |
| |
|
|| || |||||||| |||||||||| ||| |||||||| ||||||||||||||| |||||||||| ||| | ||||||||||| || ||| ||| |||| |
|
|
| T |
36425953 |
ggtggatgtgtaagaaagaaaggtgcatctgtttgtggaaatggagaagggtttatcaaagttgtaagcgtaaaagttcctgaaacgtctacggcagttg |
36426052 |
T |
|
| Q |
199 |
ctaaaggtggtttgagtttggaagaatgtgaggaagaatgcttgagaaactgctcttgtactgcctatgcagttgctga |
277 |
Q |
| |
|
| | || |||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36426053 |
ccatagatggtttgaatttggatgaatgtgagaaagaatgcttgagaaactgctcttgtactgcctatgcagttgctga |
36426131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 36433710 - 36433984
Alignment:
| Q |
1 |
taattgtgacccttttaactttgacgactttaagtgcacttgtttacttggttttgaagcaaaatttccacgtgattggtatgag--tagagatgggtcg |
98 |
Q |
| |
|
||||||||||||| | ||||||| ||||| || || ||||||||| |||||||||| | |||| |||| | |||||||||||| | |||||||||| |
|
|
| T |
36433710 |
taattgtgaccctatgaactttgcggacttcaaatgtgcttgtttacctggttttgaacccaaatctccaggcgattggtatgagagtggagatgggtca |
36433809 |
T |
|
| Q |
99 |
ggagggtgtgtaaggaagaaaggtgtatcggtttgtgggaatggagaagggtttgtcaaagttgtgagcttgaaagttcctgatacatctgtggcggttg |
198 |
Q |
| |
|
|||||||||||||||||||| ||| ||| |||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||| |||| || |
|
|
| T |
36433810 |
ggagggtgtgtaaggaagaacggttcatctgtttgtgggaatggagaagggtttatcaaaattgtcagcttgaaagttcctgatacatcgatggcaaatg |
36433909 |
T |
|
| Q |
199 |
ctaaaggtggtttgagtttggaagaatgtgaggaagaatgcttgagaaactgctcttgtactgcctatgcagttg |
273 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||| ||||||||||||| |
|
|
| T |
36433910 |
ccaaaggtggtttgagtttggaagaatgtgaaaaagaatgcttcagaaactgttcttgtacagcctatgcagttg |
36433984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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