View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16688_low_56 (Length: 281)

Name: NF16688_low_56
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16688_low_56
NF16688_low_56
[»] chr3 (1 HSPs)
chr3 (90-275)||(25982255-25982434)
[»] chr4 (2 HSPs)
chr4 (90-187)||(396464-396561)
chr4 (89-188)||(12567707-12567806)
[»] chr1 (1 HSPs)
chr1 (89-188)||(38037491-38037590)
[»] chr5 (1 HSPs)
chr5 (89-191)||(26133568-26133670)


Alignment Details
Target: chr3 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 90 - 275
Target Start/End: Complemental strand, 25982434 - 25982255
Alignment:
Q  90 taacagacgtatttttcaacagaaggaggaaagtttgcagactctttataaaaaggtgcagtttcacttatattgatggtttaaatcgaaatatgtttta 189  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||  |||||| ||||||  |||| |||||||||| |||||| |||||||||||||||    
T  25982434 taacagacgtattttttaacagaaggagaaaagtttgcagactct--ataaaagggtgcaacttcagttatattgattgtttaagtcgaaatatgtttta 25982337  T
Q  190 ttgcatactattttttaaacgggtattgttnnnnnnnnnnnnnntacatgacaaagtgatgatttaacatttgaccttcttctcac 275  Q
    |||||||| ||||||| |||||||||||||              ||||||||||||||||||||||||||||||||||||| ||||    
T  25982336 ttgcataccatttttttaacgggtattgtt----aaaaaaaaaatacatgacaaagtgatgatttaacatttgaccttcttatcac 25982255  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 90 - 187
Target Start/End: Original strand, 396464 - 396561
Alignment:
Q  90 taacagacgtatttttcaacagaaggaggaaagtttgcagactctttataaaaaggtgcagtttcacttatattgatggtttaaatcgaaatatgttt 187  Q
    |||||||| |||||||||   ||||||||||| ||||||| |||||||| ||| |||| || |||| | ||||||||||||||| || ||||||||||    
T  396464 taacagacatatttttcagaggaaggaggaaactttgcaggctctttatgaaagggtgaagcttcaatcatattgatggtttaagtcaaaatatgttt 396561  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 188
Target Start/End: Complemental strand, 12567806 - 12567707
Alignment:
Q  89 gtaacagacgtatttttcaacagaaggaggaaagtttgcagactctt-tataaaaaggtgcagtttcacttatattgatggtttaaatcgaaatatgttt 187  Q
    |||||||| |||||||| | || |||||||||| |||||||  |||| | | |||||||| |||||||   |||||| ||||||||||||||||||||||    
T  12567806 gtaacagatgtattttttagcaaaaggaggaaaatttgcagg-tcttatgtgaaaaggtgaagtttcagacatattggtggtttaaatcgaaatatgttt 12567708  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 188
Target Start/End: Original strand, 38037491 - 38037590
Alignment:
Q  89 gtaacagacgtatttttcaacagaaggaggaaagtttgcagactctttataaaaaggtgcagtttcacttatattgatggtttaaatcgaaatatgtttt 188  Q
    |||||||  |||||||||| || ||||||||||  ||||||   || | | |||||||| || |||| | ||||||||||||||| ||||||||||||||    
T  38037491 gtaacagttgtatttttcagcaaaaggaggaaaacttgcaggtcctatgtgaaaaggtgaagcttcagtcatattgatggtttaagtcgaaatatgtttt 38037590  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 191
Target Start/End: Original strand, 26133568 - 26133670
Alignment:
Q  89 gtaacagacgtatttttcaacagaaggaggaaagtttgcagactctttataaaaaggtgcagtttcacttatattgatggtttaaatcgaaatatgtttt 188  Q
    |||||| |||||||||||||  ||||||||| | ||| ||| ||||||  |||| |||  || |||| |  ||||| |||||||| ||||||||||||||    
T  26133568 gtaacaaacgtatttttcaaaggaaggaggataatttacaggctctttgcaaaagggtaaagcttcagtcgtattggtggtttaagtcgaaatatgtttt 26133667  T
Q  189 att 191  Q
    |||    
T  26133668 att 26133670  T

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