View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_low_58 (Length: 279)
Name: NF16688_low_58
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_low_58 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 47568773 - 47569034
Alignment:
| Q |
1 |
tcatcaaccagacagtcatatttgggctatcctcatccagtgtcactctagacaaggtaaaatgtcttcagctatctctttattccataaaatcatcgac |
100 |
Q |
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| T |
47568773 |
tcataaaccagacagtcatacttgggctatcctcatccagtgtcactctagacaaggtaaaatgtcttcagatatctctttattccataaaatcatcgac |
47568872 |
T |
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| Q |
101 |
accagtgataatcctactacacaaactttgaatcatcttttagatggtttttgtggcagacgacagactgacaaagcaatgctgttttacaatgacatca |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47568873 |
accggtgataatcctactacacaaactttgaatcatcttttagttggtttttgtcgcagacgacagactgacaaagcaatgctgttttacaatgacatca |
47568972 |
T |
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| Q |
201 |
tacttaaaaacggttttctgttgaaccatgatagttatcttattctgatcaatggattatgt |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47568973 |
tacttaaaaacggttttctgttgaaccatgatagttatcttattctgatcaatggattatgt |
47569034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 28 - 262
Target Start/End: Original strand, 23786687 - 23786921
Alignment:
| Q |
28 |
tatcctcatccagtgtcactctagacaaggtaaaatgtcttcagctatctctttattccataaaatcatcgacaccagtgataatcctactacacaaact |
127 |
Q |
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|||||||||||||||||||||| | |||||| |||||||||||| ||| ||||||| |||||||||||||| || || || |||||||| | ||||| |
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| T |
23786687 |
tatcctcatccagtgtcactctctaagaggtaacatgtcttcagctctctatttattcaataaaatcatcgactccggtcattatcctactgctgaaact |
23786786 |
T |
|
| Q |
128 |
ttgaatcatcttttagatggtttttgtggcagacgacagactgacaaagcaatgctgttttacaatgacatcatacttaaaaacggttttctgttgaacc |
227 |
Q |
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|| ||| ||| ||||| ||||||||| ||| | |||| ||||||||||||| |||||| |||||||||||||||||||| |||| || ||| ||| |
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| T |
23786787 |
ttaaatgctctcttagaaggtttttgtcttagaagtcagatagacaaagcaatgccgttttataatgacatcatacttaaaaagggttatcctttggacc |
23786886 |
T |
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| Q |
228 |
atgatagttatcttattctgatcaatggattatgt |
262 |
Q |
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| T |
23786887 |
atcgtagttataatattcttgtcgatggattatgt |
23786921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 22 - 262
Target Start/End: Original strand, 28238719 - 28238959
Alignment:
| Q |
22 |
ttgggctatcctcatccagtgtcactctagacaaggtaaaatgtcttcagctatctctttattccataaaatcatcgacaccagtgataatcctactaca |
121 |
Q |
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|||||||||||||||| | ||||| ||| | ||||| |||||||||||||||||| | |||||||| |||||||||||| || || |||||||| | |
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| T |
28238719 |
ttgggctatcctcatcaaatgtcattctgtcgatggtaacatgtcttcagctatctctcttttccataagatcatcgacaccggtcatcatcctactgct |
28238818 |
T |
|
| Q |
122 |
caaactttgaatcatcttttagatggtttttgtggcagacgacagactgacaaagcaatgctgttttacaatgacatcatacttaaaaacggttttctgt |
221 |
Q |
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|||||| || ||||||| |||||||||||| |||| |||| | |||| ||||||| ||||||||| |||||||||||||||| ||||||| || |
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| T |
28238819 |
ggtactttgtattctcttttatatggtttttgtgatagacatcagattcacaaggcaatgcacttttacaattacatcatacttaaaaagggttttcagt |
28238918 |
T |
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| Q |
222 |
tgaaccatgatagttatcttattctgatcaatggattatgt |
262 |
Q |
| |
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|| ||||| | |||||||| |||| ||||| ||||||||| |
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| T |
28238919 |
tggaccataagtgttatcttgttctaatcaaaggattatgt |
28238959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 65 - 262
Target Start/End: Original strand, 28231180 - 28231377
Alignment:
| Q |
65 |
tcttcagctatctctttattccataaaatcatcgacaccagtgataatcctactacacaaactttgaatcatcttttagatggtttttgtggcagacgac |
164 |
Q |
| |
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||||||||| ||||| ||||| ||||||||||||||||| || || ||||||||||||||| ||||||||||||| || |||||| ||| || || |
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| T |
28231180 |
tcttcagctttctctctattcaataaaatcatcgacaccggttatcatcctactacacaaaatttgaatcatcttctacgaggttttcgtgacaaacatg |
28231279 |
T |
|
| Q |
165 |
agactgacaaagcaatgctgttttacaatgacatcatacttaaaaacggttttctgttgaaccatgatagttatcttattctgatcaatggattatgt |
262 |
Q |
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||| | | || ||| |||| |||||||||| |||||||||||||| ||||||| ||||||| |||| |||||| |||||| | ||||||||||||| |
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| T |
28231280 |
agattcataatgcattgctcttttacaatggtatcatacttaaaaagggttttcagttgaacgatgaaagttattatattctaagcaatggattatgt |
28231377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 262
Target Start/End: Complemental strand, 21159567 - 21159356
Alignment:
| Q |
54 |
aaggtaaaatgtcttcagctatctctttattccataaaatcatcgacaccagtgataatcctactacacaaactttgaatcatcttttagatggtttttg |
153 |
Q |
| |
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||||||| |||||||| || |||||| ||||| ||| |||||| ||||| || || |||||| ||| |||||||||||| |||| | ||||||||||| |
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| T |
21159567 |
aaggtaacatgtcttctgccatctctctattctgtaatatcatcaacaccggtaatcatcctagtactgaaactttgaatcttcttctcgatggtttttg |
21159468 |
T |
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| Q |
154 |
tggcagacgacagactgacaaagcaatgctgttttacaatgacatcatacttaaaaa---cggttttctgttgaaccatgatagttatcttattctgatc |
250 |
Q |
| |
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| ||| | | | ||| ||||| ||||||| |||||||||||||||||| | | ||| |||||| ||||||||||||||||||| ||||||| ||| |
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| T |
21159467 |
tcgcaaaggtgaaactcacaaatcaatgctcttttacaatgacatcataataataaatggtggtttttagttgaaccatgatagttatattattctaatc |
21159368 |
T |
|
| Q |
251 |
aatggattatgt |
262 |
Q |
| |
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| |||||||||| |
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| T |
21159367 |
actggattatgt |
21159356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 1717565 - 1717621
Alignment:
| Q |
41 |
tgtcactctagacaaggtaaaatgtcttcagctatctctttattccataaaatcatc |
97 |
Q |
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|||||||||||| || |||| ||| |||||||| ||||||||||| ||||| ||||| |
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| T |
1717565 |
tgtcactctagaaaatgtaagatggcttcagctttctctttattctataaactcatc |
1717621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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