View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_low_59 (Length: 278)
Name: NF16688_low_59
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_low_59 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 259
Target Start/End: Original strand, 1750076 - 1750318
Alignment:
| Q |
17 |
aatatcgcaaccatgatagccgcagtccatgataaataactaacttctatgactgaacttacacttgatagttcaagtaagaataagatcccaaagacgc |
116 |
Q |
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| T |
1750076 |
aatatcgcaacgatgatagcagcagtccatgataaataactaacttctacgattgaagttgcacttgatagttcaagtaagaataagatcccaaagacgc |
1750175 |
T |
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| Q |
117 |
tgttatcaatagggcgtgatcgcgtaatggaaacaaggattatttgaaaacaggaaacaaaaaggacgacaaagaccgtgaggagaacgttatattttgc |
216 |
Q |
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| T |
1750176 |
tgttatcaatagggcgtgatcgcgtaatggaaacaagcattatttgaaaacaggaaacaagaaggacgacaaagaccgtgaggacaacgttatattttgc |
1750275 |
T |
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| Q |
217 |
catgaaattacgatcatctgataaattgtatagtatagggaag |
259 |
Q |
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| T |
1750276 |
catgaaattacgatcatctgataaattgtatagtatagggaag |
1750318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 32 - 186
Target Start/End: Original strand, 1754130 - 1754284
Alignment:
| Q |
32 |
atagccgcagtccatgataaataactaacttctatgactgaacttacacttgatagttcaagtaagaataagatcccaaagacgctgttatcaatagggc |
131 |
Q |
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| T |
1754130 |
atagcagcaatccatgatacaaaactaacttccatgactgaaattgcacttgatagtccaagtatgaataagatcccaaagatgttgtgatcgatagggc |
1754229 |
T |
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| Q |
132 |
gtgatcgcgtaatggaaacaaggattatttgaaaacaggaaacaaaaaggacgac |
186 |
Q |
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| T |
1754230 |
gcgatacggtaatggaaacaagccttgattgataacaggaaacaagaaagacgac |
1754284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 130
Target Start/End: Original strand, 1455830 - 1455927
Alignment:
| Q |
33 |
tagccgcagtccatgataaataactaacttctatgactgaacttacacttgatagttcaagtaagaataagatcccaaagacgctgttatcaataggg |
130 |
Q |
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|||| ||||||||||| ||| ||| |||||||||||||||| || || ||||||| ||||| ||||||||||||||||| ||||| |||| |||| |
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| T |
1455830 |
tagcagcagtccatgagaaaaaaccaacttctatgactgaaattgcagttgatagcaaaagtatgaataagatcccaaagattctgttgtcaacaggg |
1455927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 130
Target Start/End: Complemental strand, 1567515 - 1567418
Alignment:
| Q |
33 |
tagccgcagtccatgataaataactaacttctatgactgaacttacacttgatagttcaagtaagaataagatcccaaagacgctgttatcaataggg |
130 |
Q |
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| T |
1567515 |
tagcagcagtccatgagaaaaaaccaacttctatgactgaaattgcagttgatagcaaaagtatgaataagatcccaaagattctgttgtcaacaggg |
1567418 |
T |
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