View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_low_60 (Length: 275)
Name: NF16688_low_60
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_low_60 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 275
Target Start/End: Complemental strand, 13999304 - 13999045
Alignment:
| Q |
16 |
caaaaccctcccaacgattttgacccaaaaggttacaatctcaacggcaaaatcatgctctgtgccattatccttctcttcttcatcatagtattaatgc |
115 |
Q |
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| T |
13999304 |
caaaaccctcccaacgattttgacccaaaaggttacaatctcaacggcaaaatcatgctctgtgccattatccttctcttcttcatcatagtattaatgc |
13999205 |
T |
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| Q |
116 |
tttgtctccatatttacgctcgttggtaccttctccaatctcgtcgccggagaaaccgtatacgccgccgtactcagctggttttcttcaccgacgaccc |
215 |
Q |
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| T |
13999204 |
tttgtctccatatttacgctcgttggtaccttctccaatctcgtcgccggagaaaccgtatacgccgccgtactcagctggttttcttcaccgatgaccc |
13999105 |
T |
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| Q |
216 |
aacaaacgctgccgtcaccaccgttacacgcggactcgatgcaaccgtcatcgcctcgct |
275 |
Q |
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| T |
13999104 |
aacaaacgccgccgtcaccactgttacacgcggactcgatgctaccgtcatcgcctcgct |
13999045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 257
Target Start/End: Complemental strand, 1429052 - 1428812
Alignment:
| Q |
17 |
aaaaccctcccaacgattttgacccaaaaggttacaatctcaacggcaaaatcatgctctgtgccattatccttctcttcttcatcatagtattaatgct |
116 |
Q |
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|||| ||||||||||||| || | |||| |||||||||| |||| ||||||||||| ||| || | |||||||||| |||| ||| | |||||||| |
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| T |
1429052 |
aaaagcctcccaacgattatggcgcaaagggttacaatcgcaacagcaaaatcatgatctacgctaaagtccttctctttttcaacatcattttaatgct |
1428953 |
T |
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| Q |
117 |
ttgtctccatatttacgctcgttggtaccttctccaatctcgtcgccggagaaaccgtatacgccgccgtactcagctggttttcttcaccgacgaccca |
216 |
Q |
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| T |
1428952 |
ttgtctccatatttatgctcgttggtatcttctccaatctcgccaccggagaaaccgtatccgtcatcgtgctcagctggtcttcttcactgatgatcaa |
1428853 |
T |
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| Q |
217 |
acaaacgctgccgtcaccaccgttacacgcggactcgatgc |
257 |
Q |
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||||||| | |||||||||||||||| || || ||||||| |
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| T |
1428852 |
acaaacgtcgtcgtcaccaccgttacatgcagaatcgatgc |
1428812 |
T |
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