View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_low_66 (Length: 258)
Name: NF16688_low_66
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_low_66 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 55342387 - 55342142
Alignment:
| Q |
1 |
gtttaagtgaacataacaatgaatcacaaactctttggcatggatttaatttcatgccttctgttgcttatctattactttggtgtcttgcagtactcat |
100 |
Q |
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| T |
55342387 |
gtttaagtgaacataacaatgaatcacaaactctttggcatggatttaatttcatgccttctgttgcttatctattactttggtgtcttgcagtactcat |
55342288 |
T |
|
| Q |
101 |
tgcagccaccttgtcttttctttatatgctcaagtccatcttgcactttaatgcagtgaatgatgagtttgcacatcatattggagttaattacatgtat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
55342287 |
tgcagccaccttgtcttttctttatatgctcaagtccatcttgcactttaatgcagtgaatgatgagtttgcacatcatattggagttaactacatgtat |
55342188 |
T |
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| Q |
201 |
actccttggatttcatatcttctcatgcttcaagcatcaccgcctt |
246 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
55342187 |
actccttggatttcatatcttctcatgctgcaagcatcaccgcctt |
55342142 |
T |
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