View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16688_low_7 (Length: 638)
Name: NF16688_low_7
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 601; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 18 - 630
Target Start/End: Original strand, 3810413 - 3811025
Alignment:
| Q |
18 |
atgttgatattaaggtggtctaatagtctataacttcttagacagaagatttcagaatatatttatatgttaagtgatagatatgctcacttggcattat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3810413 |
atgttgatattaaggtggtctaatagtctataacttcttagacagaagatttcagaatatatttatatgttaagtgatagatatgctcacttggcattat |
3810512 |
T |
|
| Q |
118 |
gttcatttgtttctggtagtccttatttctgtcgcgccagataattttctcacattatgaaactgaaagctgatgtaaaatttgacttataattggtgca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3810513 |
gttcatttgtttctggtagtccttatttctgtcgcgccagataattttctcacattatgaaactgaaagctgatgtaaaatttgacttataattggtgca |
3810612 |
T |
|
| Q |
218 |
ggtatgcttcggagatggctgtgatatttatccaatctgcaatatacataggaataatagcaatgacgcatttggcaaggccgagcctctcaaaaatatg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
3810613 |
ggtatgcttcggagatggctgtgatatttatccaatctgcaatatacataggaataatagcaatgacgcgtttggcaaggccgagcctctcaaaaatatg |
3810712 |
T |
|
| Q |
318 |
ttttaggcgttccgataagagcatcaccctggcacacaacagcctaaaattagtagcattgtggtgcatacttgctgcttacgtaacacctgtctttatc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3810713 |
ttttaggcgttccgataagagcatcaccctggcacacagcagcctaaaattagtagcattgtggtgcatacttgctgcttacgtaacaccagtctttatc |
3810812 |
T |
|
| Q |
418 |
atacctcacacaattcaccctctacttggttggatcctgtattttcttggttcttttgcattttgctcaattgcaattaatatctttcttctaccaatgt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3810813 |
atacctcacacaattcaccctctacttggttggatcctgtattttcttggttcttttgcattttgctcaattgcaattaatatctttcttctaccaatgt |
3810912 |
T |
|
| Q |
518 |
taccagttttggtaccttggcttgggattcttggagtcctaatggttatggcatttccttggtatcctgatggaatagtaagagctatgtctgtgtttgg |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3810913 |
taccagttttggtaccttggcttgggattcttggagtcctaatggttatggcatttccttggtatcctgatggaatagtaagagctatgtctgtgtttgg |
3811012 |
T |
|
| Q |
618 |
ctatgcattctgt |
630 |
Q |
| |
|
||||||||||||| |
|
|
| T |
3811013 |
ctatgcattctgt |
3811025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 232 - 374
Target Start/End: Complemental strand, 41672925 - 41672783
Alignment:
| Q |
232 |
atggctgtgatatttatccaatctgcaatatacataggaataatagcaatgacgcatttggcaaggccgagcctctcaaaaatatgttttaggcgttccg |
331 |
Q |
| |
|
|||||||||||| |||| ||||| |||||||| | |||||||||||| |||| | |||||||||||| |||||||||||| |||| | | || || | |
|
|
| T |
41672925 |
atggctgtgatacttattcaatcagcaatatatcttggaataatagcactgactcgtttggcaaggccaagcctctcaaaattatgctaccgccgctctg |
41672826 |
T |
|
| Q |
332 |
ataagagcatcaccctggcacacaacagcctaaaattagtagc |
374 |
Q |
| |
|
||||||||||||| ||| ||| |||| ||| ||| ||||||| |
|
|
| T |
41672825 |
ataagagcatcacattggtacaaaacatcctcaaactagtagc |
41672783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 502 - 632
Target Start/End: Complemental strand, 41672655 - 41672525
Alignment:
| Q |
502 |
tttcttctaccaatgttaccagttttggtaccttggcttgggattcttggagtcctaatggttatggcatttccttggtatcctgatggaatagtaagag |
601 |
Q |
| |
|
|||||||| ||| ||||||| ||| || | || ||| |||| ||| ||||||| |||| || ||||| |||||||||||||| ||||| ||||||||| |
|
|
| T |
41672655 |
tttcttcttccagtgttaccggttctgatgccgtggtttggtattattggagttttaattgtcatggcgtttccttggtatccggatggggtagtaagag |
41672556 |
T |
|
| Q |
602 |
ctatgtctgtgtttggctatgcattctgtgc |
632 |
Q |
| |
|
|| | | ||||||||| |||||||| ||||| |
|
|
| T |
41672555 |
ctttatgtgtgtttggttatgcattttgtgc |
41672525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University