View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_low_74 (Length: 250)
Name: NF16688_low_74
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_low_74 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 8357775 - 8357536
Alignment:
| Q |
1 |
aacttaacaactcgtgtagttcttgtataagaaagtcttgttgcgtggattccttcaaggattgtgtcacaacaacgacatgcttctaagctagcttcga |
100 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8357775 |
aacttaacaaatcgtttagttcttgtataagaaagtcttgttgcgtggattccttcaaggattgtgtcacaacaacgacatgcttctaagctagcttcga |
8357676 |
T |
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| Q |
101 |
aatagtcaactagaagatgatgcaccttaaaattttgtgtcatgtttgttattatttcttgtcggggttcgagcaaatactcggtgagattaatgcatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8357675 |
aatagtcaactagaagatgatgcaccttaaaattttgtgtcatgtttgttattatttcttgtcggggttcgagcaaatactcggtgagattaatgcatat |
8357576 |
T |
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| Q |
201 |
aggaggaagagatgttgaacaagaggtagagagtcctttg |
240 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |
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| T |
8357575 |
aggaggaagagatgttgaacaagaggtagagagtcttttg |
8357536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 28593810 - 28594020
Alignment:
| Q |
1 |
aacttaacaactcgtgtagttcttgtataagaaagtcttgttgcgtggattccttcaaggattgtgtcacaacaacgacatgcttctaagctagcttcga |
100 |
Q |
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||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
28593810 |
aacttaacaactcgtgtgattcttgtataagaaattcttgttgagtggattccttcaaggattgtgtcacaacaacgacttgcttctaagctagcatcga |
28593909 |
T |
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| Q |
101 |
aatagtcaactagaagatgatgcaccttaaaattttgtgtcatgtttgttattatttcttgtcggggttcgagcaaatactcggtgagattaatgcatat |
200 |
Q |
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|||||| ||||||||||| |||||||||||| ||| || ||||||||||||| ||||| |||||||||||||||||| ||||||||||||| | |||||| |
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| T |
28593910 |
aatagttaactagaagatcatgcaccttaaagtttcgtctcatgtttgttatgatttcatgtcggggttcgagcaaagactcggtgagattcaggcatat |
28594009 |
T |
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| Q |
201 |
aggaggaagag |
211 |
Q |
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||||||||||| |
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| T |
28594010 |
aggaggaagag |
28594020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 131
Target Start/End: Complemental strand, 53447259 - 53447180
Alignment:
| Q |
52 |
ccttcaaggattgtgtcacaacaacgacatgcttctaagctagcttcgaaatagtcaactagaagatgatgcaccttaaa |
131 |
Q |
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|||| ||||||| |||| |||||| || ||||||||||||| ||||| || ||||| ||||||||||||||||||||||| |
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| T |
53447259 |
ccttgaaggattttgtcgcaacaaagatatgcttctaagctggcttcaaagtagtccactagaagatgatgcaccttaaa |
53447180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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