View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_low_75 (Length: 250)
Name: NF16688_low_75
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_low_75 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 2837077 - 2837318
Alignment:
| Q |
10 |
attattcttcggagtaaggctggtgtgggaagtctgaatannnnnnnnagtaccacttattcctccatgtgaagctttcaatattgcagaacctcaacat |
109 |
Q |
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| T |
2837077 |
attatttttcggagtaaggctggtgtgggaagtctgaatattttttttagtaccacttattcctccatgtgaagctttcaatattgcagaacctcaacat |
2837176 |
T |
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| Q |
110 |
tagactgtgagtgatgtaccttatactttgcctgcattcacgttgttgaataatcctagactgatcttcttggcaatgtaccac-nnnnnnntgtaaatc |
208 |
Q |
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| T |
2837177 |
tagactgtgagtgatgtaccttatactttgcctgcattcacgttgttgaataatcctagactgatctttttggcaatgtaccacaaaaaaaatgtaaatc |
2837276 |
T |
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| Q |
209 |
aagagtacttgtcttggcaaaattattctttgacaaacagag |
250 |
Q |
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| T |
2837277 |
aagagtacttgtcttggcaaagttattctttgacaaacagag |
2837318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 59 - 190
Target Start/End: Complemental strand, 1080029 - 1079898
Alignment:
| Q |
59 |
gtaccacttattcctccatgtgaagctttcaatattgcagaacctcaacattagactgtgagtgatgtaccttatactttgcctgcattcacgttgttga |
158 |
Q |
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| T |
1080029 |
gtaccacgtagtcctccatgtgaagttttcaatattgcagaatctcagcattagactgtgagtgatgtaccttataatttgcctgcgttcaccttgttga |
1079930 |
T |
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| Q |
159 |
ataatcctagactgatcttcttggcaatgtac |
190 |
Q |
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| T |
1079929 |
acaagcctagaatgctcttcttggcaatgtac |
1079898 |
T |
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