View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_low_77 (Length: 247)
Name: NF16688_low_77
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_low_77 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 21 - 230
Target Start/End: Complemental strand, 32251085 - 32250876
Alignment:
| Q |
21 |
tctagaatatccttataacttcaagagaacactgttgtattagctatggtattgcttaaacgtgtttctacttttgttaactgattaaataaataaataa |
120 |
Q |
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| T |
32251085 |
tctagaatatccttataacttcaagagaacactgttgtattagctatggtattgcttaaacgtgtttctacttttgttaactgaataaataaataaataa |
32250986 |
T |
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| Q |
121 |
gaattgtcaatctattatgaggttttgtcattagttcaattacgattcaaggaaacttgatttatataaaggcaaatcttagggaaaagagtaactcaat |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
32250985 |
gaattgtcaatctattatgaggttttgtcattagttcaattacgattcaaggaaacttgatttatataaaggaaaatcttagggaaaatagtaactcaat |
32250886 |
T |
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| Q |
221 |
agtcaatact |
230 |
Q |
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| |||||||| |
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| T |
32250885 |
actcaatact |
32250876 |
T |
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