View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_low_79 (Length: 246)
Name: NF16688_low_79
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_low_79 |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 2837312 - 2837463
Alignment:
| Q |
1 |
aacagaggatgctattctagggtgaactatgttgctcttctgaatcaagtttcaagtatcaattatccaaaagttcattttactcaaacactgatattct |
100 |
Q |
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| T |
2837312 |
aacagagaatgctattctagggtgaactatgtttctcttctgaatcaagtttcaggtatcaattatccaaaagttcattttactcaaacactgatattct |
2837411 |
T |
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| Q |
101 |
aaatattcgaatgattccatcaattgaagataacacaaatattcctattcta |
152 |
Q |
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| T |
2837412 |
aaatattcgaatgattccatcaattgaagataacacaaatattcctattcta |
2837463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 1079622 - 1079471
Alignment:
| Q |
1 |
aacagaggatgctattctagggtgaactatgttgctcttctgaatcaagtttcaagtatcaattatccaaaagttcattttactcaaacactgatattct |
100 |
Q |
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||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1079622 |
aacagagaatgctattctagggtgaactatgttgctcttatgaatcaagtttcaagtatcaattatccaaaagttcattttactcagacactgatattct |
1079523 |
T |
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| Q |
101 |
aaatattcgaatgattccatcaattgaagataacacaaatattcctattcta |
152 |
Q |
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| T |
1079522 |
aaatattcgaatgattccatcgattgaggataacacaaatgttccgattcta |
1079471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 2832529 - 2832570
Alignment:
| Q |
66 |
tccaaaagttcattttactcaaacactgatattctaaatatt |
107 |
Q |
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| T |
2832529 |
tccaaaagttcattttacacaaacactgatattccaaatatt |
2832570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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