View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_low_8 (Length: 606)
Name: NF16688_low_8
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 19 - 596
Target Start/End: Original strand, 3592559 - 3593151
Alignment:
| Q |
19 |
cgagaaatatcaaccgcactggcagcaccaccaattagaactacaacctacccagcacaaaaaatggataaaagccatgaagacgaaatatgattgtcat |
118 |
Q |
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| T |
3592559 |
cgagaaatatcaaccgcactggcagcaccaccaattagaactacaacctacccagcacaaaaaatggataaaagccatgaagacgaaatatgattgtcat |
3592658 |
T |
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| Q |
119 |
ttcttaaaataagcatagtaacttcaatgttatatgttnnnnnnnttatgaacgtgaaactacaaaccaacacagaaacaaatcagctataaatgatttg |
218 |
Q |
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| T |
3592659 |
ttcttaaaataagcatagcaacttcaatgttatatgttaaaaaaattatgaacctgaaactacaaaccaacacagaaccaaatcagctataaatgatttg |
3592758 |
T |
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| Q |
219 |
aatttgttgactttggagtacaattgttttattttaactaaaaaagaatattaatggaactagtatcaatataactaagcatattacttacttgatcttg |
318 |
Q |
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| T |
3592759 |
aatttgttgacattcgagtactattgttttattttaactaaaaaagaatactaatggaactagtatcaatataactaagcatattacttacttgatcttg |
3592858 |
T |
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| Q |
319 |
aaagggctcgggtgttctgtaattatggctatgcatttgcttccctggccatgcattaatgcctgaaaagaaagggtgatccgaagtttgtttataattt |
418 |
Q |
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| T |
3592859 |
aaagggctcgggtgttctgtaattatggctatgcatttgcttccctggccatgcattaatgcctgaaaagaaagggtgatccgaagtttgtttataattt |
3592958 |
T |
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| Q |
419 |
gagtctatcaaatctaacctt------gaataaata--------aaaagagagtatacgtta-----atattttgtgaagtatctttttgtttgaataac |
499 |
Q |
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| T |
3592959 |
gagtctatcaaatctaacctttttttagaa-aattatttcagctaagagagagtatacattaatattatattttgtgaagtatctttttgtttgaataac |
3593057 |
T |
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| Q |
500 |
tagataatgaagaattttatcttgaataaataaaaagaatacaactcatatgttgttctatacaaggttgttgtttgtattgcttacttacagtata |
596 |
Q |
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| T |
3593058 |
tagataatgaagaattttatcttgaataaataaaaagaatacaactcatatgttgttctatacaag---gttgtttgtattgcttacttacagtata |
3593151 |
T |
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