View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16688_low_80 (Length: 246)

Name: NF16688_low_80
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16688_low_80
NF16688_low_80
[»] chr6 (1 HSPs)
chr6 (51-230)||(2705146-2705324)
[»] chr7 (1 HSPs)
chr7 (1-42)||(5755578-5755619)
[»] chr5 (5 HSPs)
chr5 (1-42)||(30384197-30384238)
chr5 (17-46)||(34599435-34599464)
chr5 (17-46)||(38458869-38458898)
chr5 (9-45)||(26325934-26325970)
chr5 (17-45)||(29531876-29531904)
[»] chr4 (1 HSPs)
chr4 (1-42)||(31095352-31095393)
[»] chr8 (1 HSPs)
chr8 (18-46)||(37064582-37064610)
[»] chr3 (1 HSPs)
chr3 (9-45)||(46476848-46476884)
[»] chr1 (1 HSPs)
chr1 (17-45)||(25112714-25112742)


Alignment Details
Target: chr6 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 51 - 230
Target Start/End: Original strand, 2705146 - 2705324
Alignment:
Q  51 catcgtaaacaagaataaacactaaaggacaaaatacaaataaaacaacattaatataaggtagagacaaacttactcatggcttaagattgttagagga 150  Q
    |||| |||||||||| ||| || || ||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||    
T  2705146 catcataaacaagaaaaaa-acaaagggacaaaatacaagtaaaacaacattaatataaggtagatacaaacttactcgtggcctaagattgttagagga 2705244  T
Q  151 tgatgttgatgatgttttgtggtcctaggaaaaggtgttctcctaaaaatttcttcaacttgatgattccttctaacttc 230  Q
    | |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||    
T  2705245 taatgttgatgatgttttgtggtcctaggaaaagatgttcttctaaaaatttcttcaacttgatgattccttctaccttc 2705324  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 5755578 - 5755619
Alignment:
Q  1 attacatcagagatactttaagttatttaattgtaataaatt 42  Q
    |||||| ||||||| ||||||||||||||||||||| |||||    
T  5755578 attacaccagagatcctttaagttatttaattgtaacaaatt 5755619  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 30384197 - 30384238
Alignment:
Q  1 attacatcagagatactttaagttatttaattgtaataaatt 42  Q
    |||||||| ||||| ||||||||||||||||||||| |||||    
T  30384197 attacatcggagattctttaagttatttaattgtaacaaatt 30384238  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 34599435 - 34599464
Alignment:
Q  17 tttaagttatttaattgtaataaattagtt 46  Q
    ||||||||||||||||||||||||||||||    
T  34599435 tttaagttatttaattgtaataaattagtt 34599464  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 38458898 - 38458869
Alignment:
Q  17 tttaagttatttaattgtaataaattagtt 46  Q
    ||||||||||||||||||||||||||||||    
T  38458898 tttaagttatttaattgtaataaattagtt 38458869  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 26325970 - 26325934
Alignment:
Q  9 agagatactttaagttatttaattgtaataaattagt 45  Q
    |||||| |||||||||||||||||||| |||||||||    
T  26325970 agagatcctttaagttatttaattgtattaaattagt 26325934  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 29531876 - 29531904
Alignment:
Q  17 tttaagttatttaattgtaataaattagt 45  Q
    |||||||||||||||||||||||||||||    
T  29531876 tttaagttatttaattgtaataaattagt 29531904  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 31095393 - 31095352
Alignment:
Q  1 attacatcagagatactttaagttatttaattgtaataaatt 42  Q
    ||||||||| || | |||||||||||||||||||||||||||    
T  31095393 attacatcaaaggttctttaagttatttaattgtaataaatt 31095352  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 37064582 - 37064610
Alignment:
Q  18 ttaagttatttaattgtaataaattagtt 46  Q
    |||||||||||||||||||||||||||||    
T  37064582 ttaagttatttaattgtaataaattagtt 37064610  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 46476848 - 46476884
Alignment:
Q  9 agagatactttaagttatttaattgtaataaattagt 45  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  46476848 agagatcctttaagttatttaattgtaacaaattagt 46476884  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 25112742 - 25112714
Alignment:
Q  17 tttaagttatttaattgtaataaattagt 45  Q
    |||||||||||||||||||||||||||||    
T  25112742 tttaagttatttaattgtaataaattagt 25112714  T

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