View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_low_81 (Length: 245)
Name: NF16688_low_81
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_low_81 |
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| [»] scaffold1084 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 2899274 - 2899503
Alignment:
| Q |
1 |
ttagacttcaagcagtatcaaattttaaaacaaaatcccttctggtggacacaccagaggcacgatgggaagttgtggaacttgaataattaccgaactg |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2899274 |
ttagacttcaagcagtatcaagttttaaaacaaaatcccttctggtggacacaccagaggcatgatgggaagttgtggaacttgaataattaccgaactg |
2899373 |
T |
|
| Q |
101 |
atgttattcaagctcttggaggaattgaaggaattcttgaacacactttattcaaaggcacatattttccaacttgggaaggtctcttctgggaaaaagc |
200 |
Q |
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| T |
2899374 |
atgttattcaagctcttggaggaattgaacaaattcttgaacacactttattcaaaggaacatattttccaacttgggaaggtctcttctgggaaaaagc |
2899473 |
T |
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| Q |
201 |
atcaggttttgaggaatctatgaagtataa |
230 |
Q |
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| T |
2899474 |
atcaggttttgaggaatctatgaagtataa |
2899503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 3 - 164
Target Start/End: Complemental strand, 44779549 - 44779388
Alignment:
| Q |
3 |
agacttcaagcagtatcaaattttaaaacaaaatcccttctggtggacacaccagaggcacgatgggaagttgtggaacttgaataattaccgaactgat |
102 |
Q |
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| T |
44779549 |
agacttcaagcaatatcaagttctaaaacaaaatcccttctggtggacacaccagaggcacgatgggaagttgtggaacttgaataattaccgaactgat |
44779450 |
T |
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| Q |
103 |
gttattcaagctcttggaggaattgaaggaattcttgaacacactttattcaaaggcacata |
164 |
Q |
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| T |
44779449 |
gttattcaagcccttgggggagttgaaggaattcttgaacacacattattcaaaggaacata |
44779388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 7 - 164
Target Start/End: Complemental strand, 39876313 - 39876158
Alignment:
| Q |
7 |
ttcaagcagtatcaaattttaaaacaaaatcccttctggtggacacaccagaggcacgatgggaagttgtggaacttgaataattaccgaactgatgtta |
106 |
Q |
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| T |
39876313 |
ttcaagcaatatcaagttctaaaacaa--tcctttctgggggacacaccagaggcacgatgggaagttgtggaatttgaataattaccgaactgatgtta |
39876216 |
T |
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| Q |
107 |
ttcaagctcttggaggaattgaaggaattcttgaacacactttattcaaaggcacata |
164 |
Q |
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| T |
39876215 |
ttcaagcccttggaggagttgaaggaattcttgaacacacattattcaaaggaacata |
39876158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 165 - 230
Target Start/End: Complemental strand, 44778551 - 44778486
Alignment:
| Q |
165 |
ttttccaacttgggaaggtctcttctgggaaaaagcatcaggttttgaggaatctatgaagtataa |
230 |
Q |
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| T |
44778551 |
ttttccaacttgggagggtctcttctgggaaaaggcatcaggttttgaggaatctatgaagtataa |
44778486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 165 - 230
Target Start/End: Complemental strand, 39875403 - 39875338
Alignment:
| Q |
165 |
ttttccaacttgggaaggtctcttctgggaaaaagcatcaggttttgaggaatctatgaagtataa |
230 |
Q |
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| T |
39875403 |
ttttccaacttgggaaggtctattctgggaaaaggcatcaggtttcgaggaatctatgaagtataa |
39875338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1084 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold1084
Description:
Target: scaffold1084; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 2656 - 2717
Alignment:
| Q |
80 |
acttgaataattaccgaactgatgttattcaagctcttggaggaattgaaggaattcttgaa |
141 |
Q |
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| T |
2656 |
acttgaacaattacagaactgatgttattcaagcccttggaggtgttgaaggaattcttgaa |
2717 |
T |
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