View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_low_83 (Length: 237)
Name: NF16688_low_83
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_low_83 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 220
Target Start/End: Original strand, 1845140 - 1845346
Alignment:
| Q |
14 |
aatatacaaagttaaatagaaagattgtaataagacccacatcagcagatttataatgcattgggaggaaaccttacctataaataggtagtggactgca |
113 |
Q |
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| T |
1845140 |
aatatacaaagttgaatagaaagattgtaataagacccacatcagcagatttataatgcattgggaggaaaccttacctataaataggtagtggactgca |
1845239 |
T |
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| Q |
114 |
catctttcatatacaatcaaatgcagatgcaatgtttttcaactggattggataaatcaaatatttgagatagtatccctttttgaacatccaattgtgt |
213 |
Q |
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| T |
1845240 |
catctttcatattcaatcaaatgcagatgcaatgtttttaaattggattggataaatcaaatatttgagatagtatcccttttcgaacatccaattgtgt |
1845339 |
T |
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| Q |
214 |
ttttata |
220 |
Q |
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||||||| |
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| T |
1845340 |
ttttata |
1845346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 126
Target Start/End: Original strand, 1847361 - 1847472
Alignment:
| Q |
14 |
aatatacaaagttaaatagaaagattgtaataagacccacatcagcagatttataatgcattgggaggaaaccttacctataaataggtagtggactgca |
113 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| | |||| || ||||||||||||||||||||||| | |||||||||||| |||||| || |
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| T |
1847361 |
aatatacaaagttgaatagaaagattgtaataagacccacaacggcagctt-ataatgcattgggaggaaacctttcatataaataggtaatggacttca |
1847459 |
T |
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| Q |
114 |
catctttcatata |
126 |
Q |
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| T |
1847460 |
catctttcatata |
1847472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 1819736 - 1819925
Alignment:
| Q |
14 |
aatatacaaagttaaatagaaagattgtaataagacccacatcagcagatttataatgcattgg-gaggaaaccttacctataaataggtagtggactgc |
112 |
Q |
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| T |
1819736 |
aatataccaagttgaataaaaagattgtaatatgacccacatcggcagctt-atatagcatttgagaggaaaccttagctataaataggtaggggattga |
1819834 |
T |
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| Q |
113 |
acatctttcatatacaatcaaatgcagatgcaatgtttttcaactggattggataaatcaaatatttgagatagtatccctttttgaacat |
203 |
Q |
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||| |||| |||| |||||||||| || ||| |||||| || | ||||||||||| |||||||||||| | ||| ||||||||||||| |
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| T |
1819835 |
acacaattcaaatactatcaaatgcaaattcaacgtttttaaatttgattggataaaacaaatatttgaggtgatatacctttttgaacat |
1819925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 141
Target Start/End: Original strand, 1848177 - 1848295
Alignment:
| Q |
22 |
aagttaaatagaaagattgtaataagacccacatcagcagatttataatgcattgggaggaaaccttacctataaataggtagtggactgcacatctttc |
121 |
Q |
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| T |
1848177 |
aagttgaatagagagatagtaataagtcccacattggc-gtcttataaagcattgagaggaaaccttacttataaataggtggtggactgcacatctttc |
1848275 |
T |
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| Q |
122 |
atatacaatcaaatgcagat |
141 |
Q |
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| T |
1848276 |
aaatacaattaaatgcagat |
1848295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 116
Target Start/End: Original strand, 1842827 - 1842920
Alignment:
| Q |
22 |
aagttaaatagaaagattgtaataagacccacatcagcagatttataatgcattgggaggaaaccttacctataaataggtagtggactgcacat |
116 |
Q |
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||||| |||||| |||| |||||||| |||||||| |||| || |||| ||||||||||||||||||| ||||||||||| |||||| ||||||| |
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| T |
1842827 |
aagttgaatagagagatagtaataagtcccacatcggcagctt-ataaagcattgggaggaaaccttagctataaataggcagtggattgcacat |
1842920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 1836407 - 1836495
Alignment:
| Q |
64 |
ttataatgcattgggaggaaaccttacctataaataggtagtggactgcacatctttcatatacaatcaaatgcagatgcaatgtttttc |
153 |
Q |
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| T |
1836407 |
ttataaagcatttagaggacaccttagttataaataagtagtggactgt-catatttcaaatacaatcaaatgcaaatgcaatatttttc |
1836495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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