View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16688_low_89 (Length: 223)
Name: NF16688_low_89
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_low_89 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 31406359 - 31406566
Alignment:
| Q |
16 |
ctaaagagtcaaagagtattgagaaattttagtaagcatgaacatgactaatctggatagaaattaaattacctatcaagatccaagattgggttgtaaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31406359 |
ctaaagagtcaaagagtattgagaaattttactaagcatgaacataactaatctggatagaaattaaattacctatcaagatccaagattgggttgtaaa |
31406458 |
T |
|
| Q |
116 |
caagagtttcccaagttgcaactataaactgccaagctgaattatagtaaagtgactctactgaccaaaacattttagtgtatgtctccaaaaatataaa |
215 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
31406459 |
ccagagtttcccaagttgcaactataaactgccaagctgaattatagtaaagtgactctactgaccaaaacattttagtgtaggtctccaaaaatataaa |
31406558 |
T |
|
| Q |
216 |
gagtatcc |
223 |
Q |
| |
|
|||||||| |
|
|
| T |
31406559 |
gagtatcc |
31406566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 84 - 220
Target Start/End: Complemental strand, 38496293 - 38496157
Alignment:
| Q |
84 |
ttacctatcaagatccaagattgggttgtaaacaagagtttcccaagttgcaactataaactgccaagctgaattatagtaaagtgactctactgaccaa |
183 |
Q |
| |
|
|||||| |||||||| | || |||| ||||||||||||||||||| | |||||||||||| |||||| ||| ||| ||||||||||||||| |||||||| |
|
|
| T |
38496293 |
ttacctgtcaagatcaaggactgggctgtaaacaagagtttcccacgatgcaactataaaatgccaaactggattgtagtaaagtgactctgctgaccaa |
38496194 |
T |
|
| Q |
184 |
aacattttagtgtatgtctccaaaaatataaagagta |
220 |
Q |
| |
|
|||| | ||||| ||||||| ||||||||| |||| |
|
|
| T |
38496193 |
aacaaccttgtgtaggtctccagaaatataaaaagta |
38496157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University