View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_low_96 (Length: 206)
Name: NF16688_low_96
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_low_96 |
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Alignment Details
Target: chr6 (Bit Score: 148; Significance: 3e-78; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 12930404 - 12930233
Alignment:
| Q |
17 |
aatatgtcaggtttgtaggaatctcacctacaaaagaattattggtgagaataagttgttgcaaatgtagcaactgacctaactcctgtggaatttctcc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
12930404 |
aatatgtcaggtttgtaggaatctcacctacaaaagaattattggtgagaataagatgttgcaaatgtagcaactgacccaactcctgtggaatttctcc |
12930305 |
T |
|
| Q |
117 |
aaagaagttgttttctccaatgtcgagagttttcagaaaagtgagattggaaacatggggagataaagatcc |
188 |
Q |
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|||||||||||| ||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
12930304 |
aaagaagttgttgtctccaatgtcaagagtttccagaaaagtgagattgcaaacatggggagataaagatcc |
12930233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 12897693 - 12897522
Alignment:
| Q |
17 |
aatatgtcaggtttgtaggaatctcacctacaaaagaattattggtgagaataagttgttgcaaatgtagcaactgacctaactcctgtggaatttctcc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| ||||||||||| |
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| T |
12897693 |
aatatgtcaggtttgtaggaatctcacctacaaaagaattattggtgagaataaggtgttgcaaatgtagcaactgacccaaatcctgaggaatttctcc |
12897594 |
T |
|
| Q |
117 |
aaagaagttgttttctccaatgtcgagagttttcagaaaagtgagattggaaacatggggagataaagatcc |
188 |
Q |
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|||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
12897593 |
aaagaagttgttgtctccaatgtcgagagtttccagaaaagtgagattgcaaacatggggagataaagatcc |
12897522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 12946769 - 12946598
Alignment:
| Q |
17 |
aatatgtcaggtttgtaggaatctcacctacaaaagaattattggtgagaataagttgttgcaaatgtagcaactgacctaactcctgtggaatttctcc |
116 |
Q |
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|
||||||||||||||||||||||||||||| ||||||| |||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
12946769 |
aatatgtcaggtttgtaggaatctcacctgcaaaagagttattgttgagaaaaagttgttgcaaatgtagcaactgacccaactcctgtggaatttctcc |
12946670 |
T |
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| Q |
117 |
aaagaagttgttttctccaatgtcgagagttttcagaaaagtgagattggaaacatggggagataaagatcc |
188 |
Q |
| |
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|||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12946669 |
aaagaagttgttgtctccaatgttgagtgttttcagaaaagtgagattggaaacatggggagataaagatcc |
12946598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 12905314 - 12905143
Alignment:
| Q |
17 |
aatatgtcaggtttgtaggaatctcacctacaaaagaattattggtgagaataagttgttgcaaatgtagcaactgacctaactcctgtggaatttctcc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||| ||||||||||| |
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| T |
12905314 |
aatatgtcaggtttgtaggaatctcacctacaaaagaattattgctgagaataagttgttgcaaatgtagcaactgacccaaatcctgaggaatttctcc |
12905215 |
T |
|
| Q |
117 |
aaagaagttgttttctccaatgtcgagagttttcagaaaagtgagattggaaacatggggagataaagatcc |
188 |
Q |
| |
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|||||||||||| ||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12905214 |
aaagaagttgttgtctgtaatgtcgacacttttcagaaaagtgagattggaaacatggggagataaagatcc |
12905143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 12956206 - 12956035
Alignment:
| Q |
17 |
aatatgtcaggtttgtaggaatctcacctacaaaagaattattggtgagaataagttgttgcaaatgtagcaactgacctaactcctgtggaatttctcc |
116 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||| |||||| ||||| |||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
12956206 |
aatatgtcaagtttgttggaatctcacctacaaaagagttattgctgagagaaagtcgttgcaaatgtagcaactgacccaactcctgtggaatttctcc |
12956107 |
T |
|
| Q |
117 |
aaagaagttgttttctccaatgtcgagagttttcagaaaagtgagattggaaacatggggagataaagatcc |
188 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12956106 |
taagaagttgttgtctccaatgtcgagagttttcagaaaagtgagattgcaaacatggggagataaagatcc |
12956035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 17925487 - 17925658
Alignment:
| Q |
17 |
aatatgtcaggtttgtaggaatctcacctacaaaagaattattggtgagaataagttgttgcaaatgtagcaactgacctaactcctgtggaatttctcc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
17925487 |
aatatgtcaggtttgtaggaatctcacctacaaaagaattattgctgagaaaaagttgctgcaaatgtagcaactgacccaactcctgtggaatttctcc |
17925586 |
T |
|
| Q |
117 |
aaagaagttgttttctccaatgtcgagagttttcagaaaagtgagattggaaacatggggagataaagatcc |
188 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
17925587 |
aaagaagttgttgtctccaatgtcgagagttttcagaaaagtgagattgcaaacatggggagataaagatcc |
17925658 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 10742783 - 10742949
Alignment:
| Q |
17 |
aatatgtcaggtttgtaggaatctcacctacaaaagaattattggtgagaataagttgttgcaaatgtagcaactgacctaactcctgtggaatttctcc |
116 |
Q |
| |
|
||||||||| |||||||||||| |||||| ||||||| ||||| || |||| |||||||||||| |||||||||||||| ||||| |||||||||||||| |
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| T |
10742783 |
aatatgtcaagtttgtaggaatttcacctgcaaaagagttattagtaagaaaaagttgttgcaattgtagcaactgacccaactcttgtggaatttctcc |
10742882 |
T |
|
| Q |
117 |
aaagaagttgttttctccaatgtcgagagttttcagaaaagtgagattggaaacatggggagataaa |
183 |
Q |
| |
|
| |||| |||| | | ||| | ||| || ||||||||||||||||| ||||||||| |||||| |
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| T |
10742883 |
atagaatgtgttgttttcaagtttgagttttatcagaaaagtgagattgccaacatggggggataaa |
10742949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 10718979 - 10719090
Alignment:
| Q |
17 |
aatatgtcaggtttgtaggaatctcacctacaaaagaattattggtgagaataagttgttgcaaatgtagcaactgacctaactcctgtggaatttctcc |
116 |
Q |
| |
|
|||| ||||||||||||||||| | |||| ||||||| |||||| | ||| |||||||||||| |||||||||| || ||||| |||||||||||||| |
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|
| T |
10718979 |
aatacgtcaggtttgtaggaattttacctgcaaaagagttattgttaagataaagttgttgcaattgtagcaacttgcccaactcatgtggaatttctcc |
10719078 |
T |
|
| Q |
117 |
aaagaagttgtt |
128 |
Q |
| |
|
||||||| |||| |
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|
| T |
10719079 |
aaagaagctgtt |
10719090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 10749096 - 10749267
Alignment:
| Q |
17 |
aatatgtcaggtttgtaggaatctcacctacaaaagaattattggtgagaataagttgttgcaaatgtagcaactgacctaactcctgtggaatttctcc |
116 |
Q |
| |
|
||||||||| ||||| |||||| || ||| | || || |||||| ||||| |||||||||||| ||||||||| |||| ||||| | ||| |||||||| |
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| T |
10749096 |
aatatgtcaagtttgaaggaatttctcctgcgaacgagttattgatgagatcaagttgttgcaattgtagcaaccgacccaactcttctgggatttctcc |
10749195 |
T |
|
| Q |
117 |
aaagaagttgttttctccaatgtcgagagttttcagaaaagtgagattggaaacatggggagataaagatcc |
188 |
Q |
| |
|
|| ||||| || | |||||||| ||| || | ||||||||||||||| ||||||||| ||||||||||| |
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|
| T |
10749196 |
aaggaagtcattgtttccaatgtttagatttgtgagaaaagtgagattgccaacatggggtgataaagatcc |
10749267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 10563155 - 10562984
Alignment:
| Q |
17 |
aatatgtcaggtttgtaggaatctcacctacaaaagaattattggtgagaataagttgttgcaaatgtagcaactgacctaactcctgtggaatttctcc |
116 |
Q |
| |
|
||||||||| |||||||||||| || |||||||| || ||||| |||| ||| ||||||| |||||||||||||| |||||| |||| |||||||| |
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| T |
10563155 |
aatatgtcaagtttgtaggaatttctcctacaaacgagttattaaggagataaaggtgttgcagttgtagcaactgacccaactccggtgggatttctcc |
10563056 |
T |
|
| Q |
117 |
aaagaagttgttttctccaatgtcgagagttttcagaaaagtgagattggaaacatggggagataaagatcc |
188 |
Q |
| |
|
| | || | || | ||||| ||||||| || ||| ||| ||||||||| ||||| ||||||||||||||| |
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| T |
10563055 |
agaaaaactattgtttccaaggtcgagatttatcaaaaaggtgagattgccaacatagggagataaagatcc |
10562984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 10609834 - 10609751
Alignment:
| Q |
21 |
tgtcaggtttgtaggaatctcacctacaaaagaattattggtgagaataagttgttgcaaatgtagcaactgacctaactcctg |
104 |
Q |
| |
|
|||||||||||||||||| || ||| ||||||| |||||| ||||| |||||||||||| |||||||||||||| |||||||| |
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|
| T |
10609834 |
tgtcaggtttgtaggaatttctcctgcaaaagagttattgatgagataaagttgttgcaattgtagcaactgacccaactcctg |
10609751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 128
Target Start/End: Original strand, 11049961 - 11050064
Alignment:
| Q |
25 |
aggtttgtaggaatctcacctacaaaagaattattggtgagaataagttgttgcaaatgtagcaactgacctaactcctgtggaatttctccaaagaagt |
124 |
Q |
| |
|
|||||||||||||| || ||| ||| ||| |||||| |||| | |||||||| ||| ||||||||| |||| ||||| ||||||||||||||| ||||| |
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|
| T |
11049961 |
aggtttgtaggaatttctcctgcaagagagttattgctgagtaaaagttgttccaattgtagcaaccgacccaactcttgtggaatttctccatagaagc |
11050060 |
T |
|
| Q |
125 |
tgtt |
128 |
Q |
| |
|
|||| |
|
|
| T |
11050061 |
tgtt |
11050064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 10765248 - 10765296
Alignment:
| Q |
69 |
aagttgttgcaaatgtagcaactgacctaactcctgtggaatttctcca |
117 |
Q |
| |
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||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
10765248 |
aagttgttgcagttgtagcaactgaccgaactcctgtggaatttctcca |
10765296 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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