View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16688_low_97 (Length: 206)
Name: NF16688_low_97
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_low_97 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-106
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 12618249 - 12618044
Alignment:
| Q |
1 |
cctccaccttctccttctccctttgaattccctgatgaagattcaagtccaaattcttctcctcttgtcattgcaatcattggaatcttagcaagtgctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12618249 |
cctccaccttctccttctccctttgaattccctgatgaagattcaagtccaaatttttctcctcttgtcattgcaatcattggaatcttagcaagtgctt |
12618150 |
T |
|
| Q |
101 |
ttcttcttgtaacttactacaccataatatcaaagtattgtggtcgcagagaatcatcggcaagtgaatcgcgtgaagcaatcgatgaatttgaagacga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
12618149 |
ttcttcttgtaacttactacaccataatatcaaagtattgtggtcgcagagaatcatcggcgagtgaatcgcgtgaagcaaacgatgaatttgaagacga |
12618050 |
T |
|
| Q |
201 |
ccatca |
206 |
Q |
| |
|
|||||| |
|
|
| T |
12618049 |
ccatca |
12618044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 155
Target Start/End: Complemental strand, 27772005 - 27771880
Alignment:
| Q |
30 |
ccctgatgaagattcaagtccaaattcttctcctcttgtcattgcaatcattggaatcttagcaagtgcttttcttcttgtaacttactacaccataata |
129 |
Q |
| |
|
||||||||| ||||||| ||| ||| |||||||||||| |||||||| | ||| | ||||| | ||||||| | || ||||||| ||||| ||||| |
|
|
| T |
27772005 |
ccctgatgatgattcaaaaccatatttttctcctcttgttattgcaattttgggagttttagccactgcttttttactactaacttattacactctaata |
27771906 |
T |
|
| Q |
130 |
tcaaagtattgtggtcgcagagaatc |
155 |
Q |
| |
|
|| || |||||||||| ||||||||| |
|
|
| T |
27771905 |
tccaaatattgtggtcacagagaatc |
27771880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University