View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_low_98 (Length: 205)
Name: NF16688_low_98
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_low_98 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 37162911 - 37163105
Alignment:
| Q |
1 |
ttggagacaatcgaggactcaaagttcatgacaagaataatgatgttggaggtgagtggctttctaatctcactcttttaacccatcttgacttgagcgg |
100 |
Q |
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| T |
37162911 |
ttggagacaatcgaggactcaaagttcatgacaagaataatgatgttggaggtgagtggctttctaatctcactcttttaacccatcttgacttgagcag |
37163010 |
T |
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| Q |
101 |
cttaaccaatctcaattcttctcatgtctggctccaaatgattggtaagcttccaaaaatagaagaattgaagctatcccaatgtcatctctctg |
195 |
Q |
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| T |
37163011 |
cttaaccaatctcaattcttctcatgtctggctccaaatgattggtaagcttccaaaaatagaagaattgaagctatcccaatgtcatctttctg |
37163105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 14 - 178
Target Start/End: Original strand, 37130259 - 37130423
Alignment:
| Q |
14 |
aggactcaaagttcatgacaagaataatgatgttggaggtgagtggctttctaatctcactcttttaacccatcttgacttgagcggcttaaccaatctc |
113 |
Q |
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| T |
37130259 |
aggactcaaagttcaagaccagaataatcatgctggaggtgagtggctttctaatctcactcttttaacccatcttgacttgagtggcgtacccaatctc |
37130358 |
T |
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| Q |
114 |
aattcttctcatgtctggctccaaatgattggtaagcttccaaaaatagaagaattgaagctatc |
178 |
Q |
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| T |
37130359 |
aaatcttctcatatgtggatgcaaatgattggtaagcttccaaaaatacaagaattgaagctatc |
37130423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 14 - 178
Target Start/End: Original strand, 37137418 - 37137582
Alignment:
| Q |
14 |
aggactcaaagttcatgacaagaataatgatgttggaggtgagtggctttctaatctcactcttttaacccatcttgacttgagcggcttaaccaatctc |
113 |
Q |
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| T |
37137418 |
aggactcaaagttcatgacgagaataatcatgttggaggtgagtggctttctaatctcactctcttaactcaccttgacttgagtggggtacgaaatctt |
37137517 |
T |
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| Q |
114 |
aattcttctcatgtctggctccaaatgattggtaagcttccaaaaatagaagaattgaagctatc |
178 |
Q |
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| T |
37137518 |
gattctactcttgtttggctgcaaatgattgctaagcttccaaaaatagaagaattgaagctatc |
37137582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 46 - 178
Target Start/End: Original strand, 38745964 - 38746096
Alignment:
| Q |
46 |
ttggaggtgagtggctttctaatctcactcttttaacccatcttgacttgagcggcttaaccaatctcaattcttctcatgtctggctccaaatgattgg |
145 |
Q |
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| T |
38745964 |
ttggaggtgaatggctttctaatctcactcttttaacgcatctcgacttgagttacttaccaaatctcaattcttctcatgtctggctgcaaatgattgg |
38746063 |
T |
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| Q |
146 |
taagcttccaaaaatagaagaattgaagctatc |
178 |
Q |
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| T |
38746064 |
aaagcttccaaaaatacaagaattgaagctatc |
38746096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 8 - 178
Target Start/End: Original strand, 37144536 - 37144706
Alignment:
| Q |
8 |
caatcgaggactcaaagttcatgacaagaataatgatgttggaggtgagtggctttctaatctcactcttttaacccatcttgacttgagcggcttaacc |
107 |
Q |
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||||| |||||| |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| | || |
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| T |
37144536 |
caatcaaggactgaaagttcatgacaacaataaccatgctggaggtgagtggctttctaatctcactcttttgacccatcttgacttgagttgggtacaa |
37144635 |
T |
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| Q |
108 |
aatctcaattcttctcatgtctggctccaaatgattggtaagcttccaaaaatagaagaattgaagctatc |
178 |
Q |
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| T |
37144636 |
aatctcgattcttctcatgtctggctgcaaatgactggtaatcttaaaaaattagaagaattgaagctatc |
37144706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 173
Target Start/End: Complemental strand, 35144185 - 35144060
Alignment:
| Q |
48 |
ggaggtgagtggctttctaatctcactcttttaacccatcttgacttgagcggcttaaccaatctcaattcttctcatgtctggctccaaatgattggta |
147 |
Q |
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|||||||||||| | || ||||||||||||||||| ||||||||| | || | || |||||||||| ||||||| ||| | ||||||||||||| |
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| T |
35144185 |
ggaggtgagtggttgtccaatctcactcttttaacgcatcttgaccttagttgggtacttaatctcaattactctcatggttggttacaaatgattggta |
35144086 |
T |
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| Q |
148 |
agcttccaaaaatagaagaattgaag |
173 |
Q |
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| T |
35144085 |
tgctcccaaaaatagaagaattgaag |
35144060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 48 - 178
Target Start/End: Complemental strand, 3024831 - 3024701
Alignment:
| Q |
48 |
ggaggtgagtggctttctaatctcactcttttaacccatcttgacttgagcggcttaaccaatctcaattcttctcatgtctggctccaaatgattggta |
147 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||| |||| | |||||||||||||||||||||||||| ||||||||||| | |
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| T |
3024831 |
ggaggtgagtggctttctaatctcactcttttaacgcatcttgacttgagtcgcttgccaaatctcaattcttctcatgtctggctgcaaatgattggaa |
3024732 |
T |
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| Q |
148 |
agcttccaaaaatagaagaattgaagctatc |
178 |
Q |
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|||||||||||||| |||||||||||||||| |
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| T |
3024731 |
agcttccaaaaatacaagaattgaagctatc |
3024701 |
T |
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