View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16689_high_10 (Length: 345)
Name: NF16689_high_10
Description: NF16689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16689_high_10 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 34 - 345
Target Start/End: Complemental strand, 39839856 - 39839547
Alignment:
| Q |
34 |
caatggacccattgatggtcttttgataccatatttttccatgtcacccaaaatgaaccatgtcaaaatcaacaaaagtttgtctacaatccaaagtggt |
133 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39839856 |
caatggacccattgatggtcttttgataccatatttttccatgtcacccaaaatgaaccatgtcaaaatcaacaaaagtttgtccacaatccaaagtggt |
39839757 |
T |
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| Q |
134 |
aaccacttcaacatcataaccgctaattcaaaagttgatattccaaatatttctcttggtagcacatgaacctgtggatnnnnnnnncagaacagcccaa |
233 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
39839756 |
aaccacttcaacatcataaccgctaattcaaaagttgatattccaaatatttctcttggtagcacatgaacctgtggataaaaaaaacagaacagcccaa |
39839657 |
T |
|
| Q |
234 |
ttagannnnnnnnncacaaaagttaaaaaagaattactatgaagcactgacacagataccagacacataaaaggaacctaccgagctacgaacaaccatg |
333 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39839656 |
ttaga--tttttttcacaaaagttaaaaaagaattactatgaagcactgacacagataccagacacataaaaggaacttaccgagctacgaacaaccatg |
39839559 |
T |
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| Q |
334 |
gaaggtaaagca |
345 |
Q |
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|||||||||||| |
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| T |
39839558 |
gaaggtaaagca |
39839547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 34 - 345
Target Start/End: Original strand, 39733102 - 39733411
Alignment:
| Q |
34 |
caatggacccattgatggtcttttgataccatatttttccatgtcacccaaaatgaaccatgtcaaaatcaacaaaagtttgtctacaatccaaagtggt |
133 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39733102 |
caatggacccattgatggtcttttgataccatatttttccatgtcacccaaaatgaaccatgtcaaaatcaacaaaagtttgtccacaatccaaagtggt |
39733201 |
T |
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| Q |
134 |
aaccacttcaacatcataaccgctaattcaaaagttgatattccaaatatttctcttggtagcacatgaacctgtggatnnnnnnnncagaacagcccaa |
233 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
39733202 |
aaccacttcaacatcataaccgctaattcaaaagttgatattccaaatatttctcttggtagcacatgaacctgtggataaaaaaaacagaacagcccaa |
39733301 |
T |
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| Q |
234 |
ttagannnnnnnnncacaaaagttaaaaaagaattactatgaagcactgacacagataccagacacataaaaggaacctaccgagctacgaacaaccatg |
333 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39733302 |
ttaga--tttttttcacaaaagttaaaaaagaattactatgaagcactgacacatataccagacacataaaaggaacttaccgagctacgaacaaccatg |
39733399 |
T |
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| Q |
334 |
gaaggtaaagca |
345 |
Q |
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|||||||||||| |
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| T |
39733400 |
gaaggtaaagca |
39733411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 31290622 - 31290573
Alignment:
| Q |
158 |
aattcaaaagttgatattccaaatatttctcttggtagcacatgaacctg |
207 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||||| |||| |
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| T |
31290622 |
aattcaagagttgatattccaaatatttctcttggtaagacatgagcctg |
31290573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 208
Target Start/End: Original strand, 29857039 - 29857150
Alignment:
| Q |
97 |
caaaatcaacaaaagtttgtctacaatccaaagtggtaaccacttcaacatcataaccgctaattcaaaagttgatattccaaatatttctcttggtagc |
196 |
Q |
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|||||||||||||| ||||| || ||||||| ||||||||| |||| ||||||||| || ||| |||| |||||| | ||||| | |||||| || | |
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| T |
29857039 |
caaaatcaacaaaatcttgtcaactatccaaactggtaaccatttcatcatcataactgccaatccaaatgttgatttcccaaaaacttctctaggcaaa |
29857138 |
T |
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| Q |
197 |
acatgaacctgt |
208 |
Q |
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|||||||||||| |
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| T |
29857139 |
acatgaacctgt |
29857150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 206
Target Start/End: Complemental strand, 17408416 - 17408332
Alignment:
| Q |
122 |
atccaaagtggtaaccacttcaacatcataaccgctaattcaaaagttgatattccaaatatttctcttggtagcacatgaacct |
206 |
Q |
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||||||| |||||||| |||| || |||||| |||| ||| |||||||| |||| |||||||| || |||| ||||||||||| |
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| T |
17408416 |
atccaaattggtaaccttttcatcaacataacagctacctcataagttgattttccgaatatttccctcggtaacacatgaacct |
17408332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 296
Target Start/End: Original strand, 19040190 - 19040219
Alignment:
| Q |
267 |
ttactatgaagcactgacacagataccaga |
296 |
Q |
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| T |
19040190 |
ttactatgaagcactgacacagataccaga |
19040219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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