View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16689_high_16 (Length: 308)
Name: NF16689_high_16
Description: NF16689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16689_high_16 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 9 - 308
Target Start/End: Complemental strand, 23714283 - 23713984
Alignment:
| Q |
9 |
cgaagaatatccaaataattagacttcctactgtaaatttaacaagtttggaggaattatattgccatgattcaattcaaatgcacatgaaagctaagta |
108 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||| ||||||| ||||| ||||||||||| ||||||||||| ||||||| ||||| ||| | |
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| T |
23714283 |
cgaaaaatatccaaataattagacttcctgctgtaaatttattaagtttgtaggaactatattgccataattcaattcaactgcacataaaagcaaagca |
23714184 |
T |
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| Q |
109 |
gtaaactcaaatagttggtaagaactcaaagggtgtcaaattacctcagagatattgtcatctattcgatcagagtgtggagatggaagagagtaaggac |
208 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23714183 |
gtaaactcaaatagttggtaagaaatcaaagggtgtcaaattacctcagatatattgtcatctattcgatcagagtgtggagatggaagagagtaaggac |
23714084 |
T |
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| Q |
209 |
tgcctttcaatatgtttttctccctttccctgttcgcgtccaacaaggcctgctctaataaaactttagcctctggattaagctcgctgattatcttcaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23714083 |
tgcctttcaatatgtttttctccctttccctgttcgcgtccaacaaggcctgctctaataaaactttagcctctggattaagctcgctgattatcttcaa |
23713984 |
T |
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