View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16689_high_2 (Length: 535)
Name: NF16689_high_2
Description: NF16689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16689_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 2 - 321
Target Start/End: Original strand, 56402603 - 56402910
Alignment:
| Q |
2 |
attggctataatgttcctactataaatgtgtgaactcatgatcctgcacttgcatgctcgtatctcattcaatgagatggacatcatcaaattggttaaa |
101 |
Q |
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| T |
56402603 |
attggctataatgttcctactataaatgtgtgaactcatgatcctgcacttgcatgctcctttgtcattaagt-------acatcaacaaattggttaaa |
56402695 |
T |
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| Q |
102 |
tattttatttgtttaagagacctgaagctaatgttaaagacctccaagtgctagtttaccatttcaagaacacgcttagcttttattattattaagaaag |
201 |
Q |
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| T |
56402696 |
tattttatttgtttaagagacctgaagctaatgttaaagatctccaa-tgctagtttaccatttcaagaacacgcttagcttttattattattaagaaag |
56402794 |
T |
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| Q |
202 |
tagacctcaaaatgnnnnnnncttttatatctgaatgaaaaattctgaatgcttgttgaagtgggagttctatcttgttgatatgtgataactggtaacc |
301 |
Q |
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| T |
56402795 |
tagacctcaaaatgtttttttcttttatatc----tgaaaaattctgaatgcttgttgaagtgggagttatatattgttgatatgtgataactggtaacc |
56402890 |
T |
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| Q |
302 |
tcctacaccgactattgtct |
321 |
Q |
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| T |
56402891 |
tcctacaccgactattgtct |
56402910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 320 - 502
Target Start/End: Original strand, 56402939 - 56403121
Alignment:
| Q |
320 |
ctacaaaaaatcttttagccctaaatccgacaatgagttttactggtaagacaatgttgttgtcatgataaagatacatagtttcttccttctatttcta |
419 |
Q |
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||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
56402939 |
ctacaaacaatctttttgccctaaatccgacaatgagttttactggtaagacaatgttgttgtcatgataaagatatatagtttcttccttctatttcta |
56403038 |
T |
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| Q |
420 |
aatcggtttgaaaagcgtctttcgaagaaatatttgaagcttaggtcttgattaaaagctgaccaagtaacggtactcagaac |
502 |
Q |
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| T |
56403039 |
aatcggtttgaaaagcgtctttcgaagaaatatttgaagcttaggtcttgattaaaagctgaccaagtaacggtactcagaac |
56403121 |
T |
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