View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16689_high_7 (Length: 376)
Name: NF16689_high_7
Description: NF16689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16689_high_7 |
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| [»] scaffold0229 (1 HSPs) |
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| [»] scaffold0245 (1 HSPs) |
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Alignment Details
Target: scaffold0229 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 31 - 352
Target Start/End: Complemental strand, 580 - 259
Alignment:
| Q |
31 |
atctgaaacagtggttatgcaatgcaagaatgaataagtagagaaagaaacataccatctgaagagagacttggctctgagtagaaggacttgtaaatcc |
130 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
580 |
atctgaaacagtggttatgcaatgcaagaatgaataagtagagaaagaaacataccatctgaagagagacttggctctgagtagaaggacttgtaaatcc |
481 |
T |
|
| Q |
131 |
actaaacatataatggagatcattattttcagcaagttctcttaacctattaagttcaggcataatctctttaccaagatcaggtctatctttcctcctt |
230 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
480 |
actaaacatataatggtgatcattattttcagcaagttctcttaacctattaagttcaggcataatctctttaccaagatcaggtctatctttcctcctt |
381 |
T |
|
| Q |
231 |
aactcagcacaccttatagccatctgagcaaaccccatagcctcttcaactggccaatctgtcagtcttggatccaacatctcactaaatgttcccttct |
330 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
380 |
aactcagcacaccttatagccatctgagcaaaccccatagcctcttcaactggccaatctgtcagtcttggatccaacatctcactaaatgttcccttct |
281 |
T |
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| Q |
331 |
caatagctctaccaacatgatg |
352 |
Q |
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|||||||||||||||||||||| |
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| T |
280 |
caatagctctaccaacatgatg |
259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 31 - 352
Target Start/End: Complemental strand, 1274572 - 1274251
Alignment:
| Q |
31 |
atctgaaacagtggttatgcaatgcaagaatgaataagtagagaaagaaacataccatctgaagagagacttggctctgagtagaaggacttgtaaatcc |
130 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1274572 |
atctgaaacagtggttatgcaatgcaagaatgaataagtagagaaagaaacataccatctgaagagagacttggctctgagtagaaggacttgtaaatcc |
1274473 |
T |
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| Q |
131 |
actaaacatataatggagatcattattttcagcaagttctcttaacctattaagttcaggcataatctctttaccaagatcaggtctatctttcctcctt |
230 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1274472 |
actaaacatataatggtgatcattattttcagcaagttctcttaacctattaagttcaggcataatctctttaccaagatcaggtctatctttcctcctt |
1274373 |
T |
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| Q |
231 |
aactcagcacaccttatagccatctgagcaaaccccatagcctcttcaactggccaatctgtcagtcttggatccaacatctcactaaatgttcccttct |
330 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1274372 |
aactcagcacaccttatagccatctgagcaaaccccatagcctcttcaactggccaatctgtcagtcttggatccaacatctcactaaatgttcccttct |
1274273 |
T |
|
| Q |
331 |
caatagctctaccaacatgatg |
352 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
1274272 |
caatagctctaccaacatgatg |
1274251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0245 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: scaffold0245
Description:
Target: scaffold0245; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 31 - 276
Target Start/End: Complemental strand, 246 - 1
Alignment:
| Q |
31 |
atctgaaacagtggttatgcaatgcaagaatgaataagtagagaaagaaacataccatctgaagagagacttggctctgagtagaaggacttgtaaatcc |
130 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
246 |
atctgaaacagtggttatgcaatgcaagaatgaataagtagagaaagaaacataccatctgaagagagacttggctctgagtagaaggacttgtaaatcc |
147 |
T |
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| Q |
131 |
actaaacatataatggagatcattattttcagcaagttctcttaacctattaagttcaggcataatctctttaccaagatcaggtctatctttcctcctt |
230 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
146 |
actaaacatataatggtgatcattattttcagcaagttctcttaacctattaagttcaggcataatctctttaccaagatcaggtctatctttcctcctt |
47 |
T |
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| Q |
231 |
aactcagcacaccttatagccatctgagcaaaccccatagcctctt |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46 |
aactcagcacaccttatagccatctgagcaaaccccatagcctctt |
1 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 281 - 340
Target Start/End: Original strand, 50439185 - 50439244
Alignment:
| Q |
281 |
tggccaatctgtcagtcttggatccaacatctcactaaatgttcccttctcaatagctct |
340 |
Q |
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||||||||| |||| | | ||||||||||||||| |||||||||| |||||||||||||| |
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| T |
50439185 |
tggccaatcagtcactgtaggatccaacatctcagtaaatgttcctttctcaatagctct |
50439244 |
T |
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