View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16689_high_9 (Length: 358)
Name: NF16689_high_9
Description: NF16689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16689_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 183 - 284
Target Start/End: Original strand, 15164093 - 15164195
Alignment:
| Q |
183 |
ttccttcatatcattcattatgttagaaacaattgcgggattggaggtttaattataggggtttttagtaattttgttcgt-tagggttagggttaagtt |
281 |
Q |
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| T |
15164093 |
ttcctacatatcattcattatgttagaaacaattgcgggattggaggtttaattataggggtttttagtaattttgttcatatagggttagggttaagtt |
15164192 |
T |
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| Q |
282 |
gtt |
284 |
Q |
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||| |
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| T |
15164193 |
gtt |
15164195 |
T |
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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 347
Target Start/End: Original strand, 15164232 - 15164266
Alignment:
| Q |
313 |
ttgcctcacttgtgagtgtgcagctgaaagaataa |
347 |
Q |
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| T |
15164232 |
ttgtctcacttgtgagtgtgcagctgaaagaataa |
15164266 |
T |
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Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 74 - 173
Target Start/End: Complemental strand, 35341739 - 35341640
Alignment:
| Q |
74 |
cgggatacaaatttcgagagacttgtccagtgctccactactgtttttgttatattccattgttatcttttggatcaaacaccgcacaacttttactgtt |
173 |
Q |
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| T |
35341739 |
cgggttacaaatttcgggagacttgtccagtgctccgctactgtttttgttctgttccattgttatcttttggatcaaacaccgcacaacttttattgtt |
35341640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 74 - 173
Target Start/End: Original strand, 44184945 - 44185044
Alignment:
| Q |
74 |
cgggatacaaatttcgagagacttgtccagtgctccactactgtttttgttatattccattgttatcttttggatcaaacaccgcacaacttttactgtt |
173 |
Q |
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| T |
44184945 |
cgggttacaaatttcagtagacttgtccagtgctccgctattgtttttgttctattccattgttatcttttggatcaaacaccgcacaacttttattgtt |
44185044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 74 - 173
Target Start/End: Original strand, 10420775 - 10420874
Alignment:
| Q |
74 |
cgggatacaaatttcgagagacttgtccagtgctccactactgtttttgttatattccattgttatcttttggatcaaacaccgcacaacttttactgtt |
173 |
Q |
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| T |
10420775 |
cgggttacaaatttcgggagacttgtccggtgctccggtactgtttttgttctgttccattgttatcttttggatcaaacactgcacaatttttattgtt |
10420874 |
T |
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