View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16689_low_2 (Length: 381)
Name: NF16689_low_2
Description: NF16689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16689_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 36875845 - 36876130
Alignment:
| Q |
18 |
aaattaatgaccatattccaattctttcatgcgggatttaaactattgtccctcaaaataataaagttaagtccttaccactaaaccgacgcctcttaga |
117 |
Q |
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| T |
36875845 |
aaattaatgaccatattccaattctttcatgcgggatttaaactattgtccctcaaaataataaagttaagtccttaccactaaaccgacgcctcttaga |
36875944 |
T |
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| Q |
118 |
cctacttactaaattaataacttacaagaaaaaattatttag--tttttatacaatacaagaaaag--ataatttacaacttggggatacctgagatgca |
213 |
Q |
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| T |
36875945 |
catacttaataaattaataacttacaagaaaaaattatttagtttttttataaaatacaagaaaagttataatttacaacttggggatatctgagatgca |
36876044 |
T |
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| Q |
214 |
tgaaaagttgagaatatgttttccaaagcttcctcttcgattataactatgccacaaaattttaactgtgttataatttggtgcat |
299 |
Q |
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| T |
36876045 |
tgaaaagttgagaatatgttttccaaagtttcctcttcgattataactatgccacaaaattttaactgtgttataatttggtgcat |
36876130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 310 - 366
Target Start/End: Original strand, 36876187 - 36876243
Alignment:
| Q |
310 |
atccatcaacgagggcaataagactttcctttgatgtctaaattttgtcttcaactt |
366 |
Q |
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| T |
36876187 |
atccatcaacgagggcaataagactttcctttgatgtctaaattttgtcttcaactt |
36876243 |
T |
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