View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16689_low_3 (Length: 259)
Name: NF16689_low_3
Description: NF16689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16689_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 23332800 - 23332595
Alignment:
| Q |
12 |
tgagatgaagggtttctataaggtagatcgtggtgcgtgggtcaccctgacttatgtacagccgaatcttctagatatgactatcgcagagagatcagga |
111 |
Q |
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| T |
23332800 |
tgagctgaagggtttctataaggtagatcgtggtgcgtgggtcaccctgacgtatgtacagccgaatcttctagatatgactatcgcagagagatcagga |
23332701 |
T |
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| Q |
112 |
gtcgaaatcaactatcctaacaaatttcttcctcccatgtcgaaaatgattgtccaacgtgagggtggatcggtcatgcgcttctatcgctcattcgtcc |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23332700 |
gtcgaaatcaactatcctaacaaatttcttcctcccatgtcgaaaatgattgtcccacgtgagggtggatcggtcatgcgcttctatcgctcattcgtcc |
23332601 |
T |
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| Q |
212 |
acatat |
217 |
Q |
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| |||| |
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| T |
23332600 |
atatat |
23332595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 254
Target Start/End: Complemental strand, 23322373 - 23322331
Alignment:
| Q |
212 |
acatatgcgtttggattttacaacgattgtgtttgatgatgtc |
254 |
Q |
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| T |
23322373 |
acatatgcgtttggagtttacaacgtttgtgtttggtgatgtc |
23322331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 254
Target Start/End: Complemental strand, 23332540 - 23332498
Alignment:
| Q |
212 |
acatatgcgtttggattttacaacgattgtgtttgatgatgtc |
254 |
Q |
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| T |
23332540 |
acatatgcgtttggagtttacaacgtttgtgtttggtgatgtc |
23332498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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