View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16689_low_4 (Length: 240)
Name: NF16689_low_4
Description: NF16689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16689_low_4 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 35373026 - 35373248
Alignment:
| Q |
18 |
ggaataattcatgccttagaaggatggaatgttcatgaatgtggtgacactatacttagcattgagaaagtttgggaagcaagtattcgtcatggtttcc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35373026 |
ggaataattcatgccttagaaggatggaatgttcatgaatgtggtgacactatacttagcactgagaaagtttgggaagcaagtattcgtcatggtttcc |
35373125 |
T |
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| Q |
118 |
aacctctgaagaatattctcacaaattaaccaattgtgacaaatgggtttatgttatcgatatacattcttcttgtttgagttatcaaagtttgtttttc |
217 |
Q |
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|||||||||||||||| |||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35373126 |
aacctctgaagaatatcctcacaaattaaccaagtgtgacaaatgggtttacattattgatatacattcttcttgtttgagttatcaaagtttgtttttc |
35373225 |
T |
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| Q |
218 |
attatcaaaacatgaaggttgac |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
35373226 |
attatcaaaacatgaaggttgac |
35373248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 35360657 - 35360825
Alignment:
| Q |
18 |
ggaataattcatgccttagaaggatggaatgttcatgaatgtggtgacactatacttagcattgagaaagtttgggaagcaagtattcgtcatggtttcc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35360657 |
ggaataattcatgccttagaaggatggaatgttcatgaatgtggtgacactatacttagcattgagaaagtttgggaagcaagtattcgtcatggtttcc |
35360756 |
T |
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| Q |
118 |
aacctctgaagaatattctcacaaattaaccaattgtgacaaatgggtttatgttatcgatatacattc |
186 |
Q |
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| T |
35360757 |
aacctctgaagaatattctcacaaattaaccaagtgtgacaaatgggtttacattatcgatatacattc |
35360825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 35383029 - 35383140
Alignment:
| Q |
18 |
ggaataattcatgccttagaaggatggaatgttcatgaatgtggtgacactatacttagcattgagaaagtttgggaagcaagtattcgtcatggtttcc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35383029 |
ggaataattcatgccttagaaggatggaatgttcatgaatgtggtgacactatacttagcactgagaaagtttgggaagcaagtattcgtcatggtttcc |
35383128 |
T |
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| Q |
118 |
aacctctgaaga |
129 |
Q |
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||||||| |||| |
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| T |
35383129 |
aacctctaaaga |
35383140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 19691161 - 19691260
Alignment:
| Q |
18 |
ggaataattcatgccttagaaggatggaatgttcatgaatgtggtgacactatacttagcattgagaaagtttgggaagcaagtattcgtcatggtttcc |
117 |
Q |
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||||||||||||||||||||| |||||||||||||||| |||||||||||| || || |||||||||||| ||||||||||||||||| |||||||||| |
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| T |
19691161 |
ggaataattcatgccttagaaagatggaatgttcatgagtgtggtgacactgtatttgacattgagaaagtatgggaagcaagtattcgccatggtttcc |
19691260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 19701746 - 19701845
Alignment:
| Q |
18 |
ggaataattcatgccttagaaggatggaatgttcatgaatgtggtgacactatacttagcattgagaaagtttgggaagcaagtattcgtcatggtttcc |
117 |
Q |
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||||||||||||||||||||| |||||||||||||||| |||||||||||| || || |||||||||||| ||||||||||||||||| |||||||||| |
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| T |
19701746 |
ggaataattcatgccttagaaagatggaatgttcatgagtgtggtgacactgtatttgacattgagaaagtatgggaagcaagtattcgccatggtttcc |
19701845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 19625709 - 19625613
Alignment:
| Q |
18 |
ggaataattcatgccttagaaggatggaatgttcatgaatgtggtgacactatacttagcattgagaaagtttgggaagcaagtattcgtcatggtt |
114 |
Q |
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||||||||||||||||||||||||||| ||| |||||| ||||| |||||| || ||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
19625709 |
ggaataattcatgccttagaaggatgggatgctcatgagtgtggcgacactgtatttaacattgagaaagtatgggaagcaagtattcgtcatggtt |
19625613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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