View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16690_high_3 (Length: 434)
Name: NF16690_high_3
Description: NF16690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16690_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 32682954 - 32683297
Alignment:
| Q |
1 |
acagaatcatcacaacaaagaatcaatcacctacctagtcacatgcactattatgttcattttcatctaagtacctgcacgtcctagtaatttccatcca |
100 |
Q |
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| T |
32682954 |
acagaatcatcacaacaaagaatcaatcacctacctagtcacatgcactattatgatcattttcatctaagtacctgaacgtcctagtaattttcatcca |
32683053 |
T |
|
| Q |
101 |
agtattattgtcatttatttctgcaaacagaaatttacattcagaagtaaagtaacttgttgcttgctcatacatgcaaatgggacagatagatttgtct |
200 |
Q |
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| T |
32683054 |
agtattattgtcatttatttctgcaaacagaaatttacattcagaagcaaagtaacttgttgcttgctcatacatgcaaatgggacagatagatttgtct |
32683153 |
T |
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| Q |
201 |
ttctcacatgactgtaacannnnnnnacatgtgcaagttttagatatgggagggccaccaccatattcatgctatcattggtaatagatcaatcatggtg |
300 |
Q |
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| T |
32683154 |
ttctcacgtgactgtaacatttttttacatgtgcaagttttagatatgggagggccaccaccatattcatgctatcattggtaatagatcaatcatggtg |
32683253 |
T |
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| Q |
301 |
ctgttaaaggtttttccaagagtagtggtggtgttaaatcccct |
344 |
Q |
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| T |
32683254 |
ctgttaaaggtttttccaagagtagtggtggtgttaaatcccct |
32683297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 365 - 417
Target Start/End: Original strand, 32683466 - 32683518
Alignment:
| Q |
365 |
tactttgttatggatcttacttcattaatcttccttattaattaagcaaagca |
417 |
Q |
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| T |
32683466 |
tactttgttatggatcttacttcattaatctttcttattaattaagcaaagca |
32683518 |
T |
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