View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16690_high_7 (Length: 342)
Name: NF16690_high_7
Description: NF16690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16690_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 37188843 - 37189165
Alignment:
| Q |
1 |
ccaacaccaaccaaaccaataacacaacaagaacctcaaaagcctcagcaaccagcaacaattcctcagaaaccaaacactgctcctcaagtttctgatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37188843 |
ccaacaccaaccaaaccaataacacaacaagaacctcaaaagcctcagcaaccagcaacaattcctcagaaaccaaacactgctcctcaagtttctgatc |
37188942 |
T |
|
| Q |
101 |
agaaaaaacaagtagtacatcaagaaccaaacaaagaaattgaagaagtgtctcaaaggaagggaaaaggtaaagctgaggaattaaaagaagatattga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37188943 |
agaaaaaacaagtagtacatcaagaaccaaacaaagaaattgaagaagtgtctcaaaggaagggaaaaggtaaagctgaggaattaaaagaagatattga |
37189042 |
T |
|
| Q |
201 |
tgatgtgaataacaaagttgcatcaaaagtataccaaaaaagtcattgactatggaaatggtttcaagacagagacaagaatatgtgaatgcattatgtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37189043 |
tgatgtgaataacaaagttgcatcaaaagtatacgaaaaaagtcattgactatggaaatggtttcaagacagagacaagaatatgtgaatgcattatgtg |
37189142 |
T |
|
| Q |
301 |
gtttggttgatgaagttaagaag |
323 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
37189143 |
gtttggttgatgaagttaagaag |
37189165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 37893745 - 37894068
Alignment:
| Q |
1 |
ccaacaccaaccaaaccaataacacaacaagaacctcaaaagcctcagcaaccagcaacaattcctcagaaaccaaacactgctcctcaagtttctgatc |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37893745 |
ccaacaccaaccaaaccaacaacacaacaagaacctcaaaagcctcagcaaccagcaacaattcctcagaaaccaaacactgctcctcaagtttctgatc |
37893844 |
T |
|
| Q |
101 |
agaaaaaacaagtagtacatcaagaaccaaacaaagaaattgaagaagtgtctcaaaggaagggaaaaggtaaagctgaggaattaaaagaagatattga |
200 |
Q |
| |
|
|||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37893845 |
agaaaaaacaagtagtgcaacaagaaccaaagaaagaaattgaagaagtgtctcaaaggaagggaaaaggtaaagctgaggaattaaaagaagatattga |
37893944 |
T |
|
| Q |
201 |
tgatgtgaataacaaagttgcatcaaaagtatac--caaaaaagtcattgactatggaaatggtttcaagacagagacaagaatatgtgaatgcattatg |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37893945 |
tgatgtgaataacaaagttgcatcaaaagt-tgctgaaaaaaagtcattgactatggaaatggtttcaagacagagacaagaatatgtgaatgcattatg |
37894043 |
T |
|
| Q |
299 |
tggtttggttgatgaagttaagaag |
323 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
37894044 |
tggtttggttgatgaagttaagaag |
37894068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University