View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16690_high_8 (Length: 297)

Name: NF16690_high_8
Description: NF16690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16690_high_8
NF16690_high_8
[»] chr6 (23 HSPs)
chr6 (1-196)||(8341390-8341576)
chr6 (213-292)||(15129571-15129649)
chr6 (213-277)||(12435983-12436047)
chr6 (213-292)||(3056951-3057030)
chr6 (213-292)||(9351109-9351188)
chr6 (217-276)||(20898992-20899051)
chr6 (213-292)||(24127809-24127888)
chr6 (213-292)||(34338079-34338158)
chr6 (214-275)||(18306714-18306775)
chr6 (220-292)||(19324757-19324830)
chr6 (213-273)||(14372171-14372231)
chr6 (213-292)||(8462021-8462100)
chr6 (146-196)||(8337204-8337254)
chr6 (235-285)||(10138892-10138942)
chr6 (214-292)||(13575015-13575093)
chr6 (214-292)||(13577554-13577632)
chr6 (246-292)||(26522739-26522785)
chr6 (221-277)||(8483625-8483681)
chr6 (221-277)||(14641465-14641521)
chr6 (252-296)||(22955769-22955813)
chr6 (252-296)||(23832580-23832624)
chr6 (221-277)||(24617726-24617782)
chr6 (252-292)||(27962067-27962107)
[»] scaffold0595 (1 HSPs)
scaffold0595 (8-196)||(5397-5577)
[»] chr2 (15 HSPs)
chr2 (213-292)||(38242120-38242199)
chr2 (215-292)||(17679701-17679778)
chr2 (213-291)||(20632479-20632557)
chr2 (213-292)||(20477439-20477518)
chr2 (220-274)||(38376856-38376910)
chr2 (213-292)||(22169951-22170030)
chr2 (213-292)||(24524061-24524140)
chr2 (213-274)||(29216635-29216696)
chr2 (213-274)||(29329934-29329995)
chr2 (213-292)||(26916642-26916721)
chr2 (220-275)||(28522883-28522938)
chr2 (217-292)||(34454904-34454979)
chr2 (252-292)||(25971021-25971061)
chr2 (213-277)||(28698222-28698286)
chr2 (252-292)||(40926485-40926525)
[»] chr3 (11 HSPs)
chr3 (213-297)||(3736490-3736574)
chr3 (213-277)||(18517707-18517771)
chr3 (213-292)||(26430271-26430350)
chr3 (214-292)||(1051303-1051381)
chr3 (213-277)||(47165871-47165935)
chr3 (213-277)||(51661709-51661773)
chr3 (213-292)||(16037971-16038050)
chr3 (213-276)||(19826397-19826460)
chr3 (220-277)||(14674169-14674227)
chr3 (220-273)||(25760053-25760106)
chr3 (213-297)||(16053462-16053546)
[»] chr5 (11 HSPs)
chr5 (213-292)||(21877886-21877965)
chr5 (213-277)||(5784470-5784534)
chr5 (213-273)||(12851785-12851845)
chr5 (218-277)||(21711528-21711587)
chr5 (214-292)||(35341903-35341980)
chr5 (221-277)||(15614766-15614822)
chr5 (221-292)||(2259390-2259461)
chr5 (213-292)||(28682742-28682821)
chr5 (213-292)||(31329262-31329341)
chr5 (214-277)||(34995435-34995498)
chr5 (235-292)||(39324353-39324410)
[»] scaffold0363 (1 HSPs)
scaffold0363 (213-297)||(5281-5365)
[»] chr8 (15 HSPs)
chr8 (213-297)||(14413346-14413430)
chr8 (213-292)||(21593197-21593276)
chr8 (214-290)||(16889990-16890066)
chr8 (216-292)||(23595391-23595467)
chr8 (216-292)||(23604313-23604389)
chr8 (216-297)||(16290865-16290946)
chr8 (213-290)||(29840877-29840954)
chr8 (233-292)||(23124009-23124068)
chr8 (222-292)||(41600738-41600808)
chr8 (215-292)||(6001436-6001513)
chr8 (213-274)||(17274742-17274803)
chr8 (223-292)||(26867472-26867541)
chr8 (213-277)||(10568285-10568349)
chr8 (252-292)||(11837153-11837193)
chr8 (213-277)||(45268820-45268884)
[»] scaffold0093 (1 HSPs)
scaffold0093 (213-285)||(16045-16117)
[»] scaffold0012 (2 HSPs)
scaffold0012 (213-292)||(55761-55840)
scaffold0012 (213-277)||(103735-103799)
[»] chr4 (11 HSPs)
chr4 (213-292)||(3007268-3007347)
chr4 (213-292)||(1924639-1924718)
chr4 (220-289)||(34512077-34512146)
chr4 (220-277)||(11485189-11485246)
chr4 (213-292)||(8667083-8667161)
chr4 (213-277)||(44673660-44673724)
chr4 (213-276)||(19904598-19904661)
chr4 (220-277)||(18025395-18025453)
chr4 (214-292)||(18234256-18234334)
chr4 (213-274)||(7190106-7190167)
chr4 (213-290)||(33040559-33040636)
[»] chr1 (14 HSPs)
chr1 (213-292)||(16280445-16280524)
chr1 (214-292)||(21813177-21813255)
chr1 (214-290)||(10423787-10423863)
chr1 (220-292)||(13309371-13309443)
chr1 (214-292)||(27035838-27035916)
chr1 (213-296)||(24961858-24961941)
chr1 (213-275)||(35877005-35877067)
chr1 (220-292)||(21464784-21464857)
chr1 (214-274)||(2583065-2583125)
chr1 (213-292)||(23487465-23487544)
chr1 (214-277)||(33064806-33064869)
chr1 (213-269)||(20808741-20808797)
chr1 (252-292)||(22522822-22522862)
chr1 (252-292)||(34528943-34528983)
[»] scaffold0265 (1 HSPs)
scaffold0265 (214-292)||(19554-19632)
[»] scaffold0292 (1 HSPs)
scaffold0292 (213-277)||(21249-21313)
[»] scaffold0238 (1 HSPs)
scaffold0238 (213-292)||(4453-4532)
[»] scaffold0029 (1 HSPs)
scaffold0029 (213-292)||(129435-129514)
[»] scaffold0002 (1 HSPs)
scaffold0002 (213-292)||(307252-307331)
[»] scaffold0001 (1 HSPs)
scaffold0001 (213-292)||(20657-20736)
[»] scaffold0009 (1 HSPs)
scaffold0009 (217-297)||(1483-1563)
[»] scaffold0437 (2 HSPs)
scaffold0437 (213-292)||(14315-14394)
scaffold0437 (221-277)||(11443-11499)
[»] scaffold0068 (1 HSPs)
scaffold0068 (218-277)||(2323-2382)
[»] scaffold0020 (1 HSPs)
scaffold0020 (220-292)||(123836-123909)
[»] scaffold0134 (1 HSPs)
scaffold0134 (213-292)||(2495-2574)
[»] scaffold0553 (1 HSPs)
scaffold0553 (220-292)||(7490-7563)
[»] scaffold0291 (1 HSPs)
scaffold0291 (235-292)||(21881-21938)
[»] scaffold0125 (1 HSPs)
scaffold0125 (247-292)||(35529-35574)
[»] scaffold0007 (1 HSPs)
scaffold0007 (213-290)||(173884-173961)
[»] scaffold1821 (1 HSPs)
scaffold1821 (252-296)||(990-1034)
[»] chr7 (3 HSPs)
chr7 (213-277)||(12727830-12727894)
chr7 (213-297)||(18270282-18270365)
chr7 (252-292)||(20936836-20936876)


Alignment Details
Target: chr6 (Bit Score: 91; Significance: 4e-44; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 8341576 - 8341390
Alignment:
Q  1 tttaacgttgtcataaagtaaaattgagaaactcttaaatttaagaatttatagttaatttctaatgaatgtatattannnnnnngatctagtctaatga 100  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||       ||||  ||||||       | |||||||||||||    
T  8341576 tttaacgttgttatagagtaaaattgagaaactcttaaatttaagaatttatagttaat-------gaat--atattattttttgg-tctagtctaatga 8341487  T
Q  101 atatatttaaacccttctaattaataacaa---tctaagtttagaaagtcaatgaaacgaaaaggatattaaaggatagtgaatcttttcttcttcaag 196  Q
    |||||||||| |||||||||||||||||||   || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8341486 atatatttaa-cccttctaattaataacaacaatc-aagtttagaaagtcaatgaaacgaaaaggatattaaaggatagtggatcttttcttcttcaag 8341390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 213 - 292
Target Start/End: Original strand, 15129571 - 15129649
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    |||||||||||||||||| || ||||| |||| ||||| ||||||| |||||||||||||||||| ||||||| ||||||    
T  15129571 ataagcaaggagagtggaaaaacatcaggcggcatcatcgacatcc-aactaggttggcaccccgagacacctccatcct 15129649  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 12436047 - 12435983
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccg 277  Q
    |||||||||||||| ||||| |||||| | || ||||| ||||||||||||||||||||||||||    
T  12436047 ataagcaaggagagaggacatgcatcaggaggcatcatcgacatcccaactaggttggcaccccg 12435983  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 292
Target Start/End: Complemental strand, 3057030 - 3056951
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    |||||||||||||||||||| |||||||| |  | ||| ||||||||||||| ||||| |||||| || |||| ||||||    
T  3057030 ataagcaaggagagtggacaggcatcaagagacaacatcgacatcccaactaagttggtaccccgagaaacctccatcct 3056951  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 292
Target Start/End: Original strand, 9351109 - 9351188
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    |||||| ||||||||||||| |||||||  |  | ||| |||||||||||||||||||||||||| || |||| ||||||    
T  9351109 ataagcgaggagagtggacatgcatcaatagacaacatcgacatcccaactaggttggcaccccgagaaacctccatcct 9351188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 276
Target Start/End: Complemental strand, 20899051 - 20898992
Alignment:
Q  217 gcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcacccc 276  Q
    |||||||||| |||||||||||||| || | ||  |||||||||||||||||||||||||    
T  20899051 gcaaggagagaggacaagcatcaagaggcaacaccgacatcccaactaggttggcacccc 20898992  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 292
Target Start/End: Original strand, 24127809 - 24127888
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    ||||||||| |||| |||||  ||||||| |||||||| ||||||||| ||||||||||||| || || |||| ||||||    
T  24127809 ataagcaagaagagaggacagacatcaagaggtatcatcgacatcccagctaggttggcacctcgagaaacctccatcct 24127888  T

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Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 292
Target Start/End: Original strand, 34338079 - 34338158
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    ||||| ||||||||  ||||  ||||||| || ||||| |||||||||||||||||||||||||| || |||| ||||||    
T  34338079 ataagtaaggagagatgacagccatcaagaggaatcatcgacatcccaactaggttggcaccccgagagacctccatcct 34338158  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 275
Target Start/End: Original strand, 18306714 - 18306775
Alignment:
Q  214 taagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccc 275  Q
    ||||||||||||| ||||| |||||| | |  ||||| ||||||||||||||||||||||||    
T  18306714 taagcaaggagagaggacaggcatcaggagtcatcatcgacatcccaactaggttggcaccc 18306775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 19324830 - 19324757
Alignment:
Q  220 aggagagtggaca-agcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    ||||||||||||| ||||||||| |   |||| |||||||||||||||||||||||||| || |||| ||||||    
T  19324830 aggagagtggacacagcatcaagagacgtcatcgacatcccaactaggttggcaccccgagatacctccatcct 19324757  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 273
Target Start/End: Original strand, 14372171 - 14372231
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcac 273  Q
    ||||||||||||| ||||||  ||||||| || | ||| ||||||||||||||||||||||    
T  14372171 ataagcaaggagaatggacagacatcaagaggcaacatcgacatcccaactaggttggcac 14372231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 292
Target Start/End: Complemental strand, 8462100 - 8462021
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    |||||||||||  || ||||  ||||||| || ||||| ||||||||||||||||||||||| || || |||| ||||||    
T  8462100 ataagcaaggaacgtagacagacatcaagaggcatcatcgacatcccaactaggttggcacctcgagagacctccatcct 8462021  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 8337254 - 8337204
Alignment:
Q  146 tcaatgaaacgaaaaggatattaaaggatagtgaatcttttcttcttcaag 196  Q
    ||||||||||| ||||||||||||||| | ||| ||||| |||||||||||    
T  8337254 tcaatgaaacgtaaaggatattaaagggtggtggatcttctcttcttcaag 8337204  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 285
Target Start/End: Complemental strand, 10138942 - 10138892
Alignment:
Q  235 catcaagcggtatcattgacatcccaactaggttggcaccccgtgacacct 285  Q
    ||||||| || ||| | |||||||||||||||||||||||||| |||||||    
T  10138942 catcaagaggcatcgtcgacatcccaactaggttggcaccccgagacacct 10138892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 292
Target Start/End: Complemental strand, 13575093 - 13575015
Alignment:
Q  214 taagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    |||||| ||||||  |||| |||||||| || | ||  |||||||||||||||||||||| ||| || |||||||||||    
T  13575093 taagcagggagagaagacatgcatcaagagggaacaccgacatcccaactaggttggcactccgggaaaccttcatcct 13575015  T

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Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 292
Target Start/End: Complemental strand, 13577632 - 13577554
Alignment:
Q  214 taagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    |||||| ||||||  |||| |||||||| || | ||  |||||||||||||||||||||| ||| || |||||||||||    
T  13577632 taagcagggagagaagacatgcatcaagagggaacaccgacatcccaactaggttggcactccgggaaaccttcatcct 13577554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 26522785 - 26522739
Alignment:
Q  246 atcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    ||||| |||||||||||||||||||||||||| || |||| ||||||    
T  26522785 atcatcgacatcccaactaggttggcaccccgagagacctccatcct 26522739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 277
Target Start/End: Original strand, 8483625 - 8483681
Alignment:
Q  221 ggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccg 277  Q
    |||| ||||||| |||||||| || | ||  ||||||||||||||||||||||||||    
T  8483625 ggagcgtggacatgcatcaagaggaaacacggacatcccaactaggttggcaccccg 8483681  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 14641521 - 14641465
Alignment:
Q  221 ggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccg 277  Q
    |||||| |||||| ||||||| || | ||  ||||||||||||||||||||||||||    
T  14641521 ggagagaggacaaacatcaagagggaacaccgacatcccaactaggttggcaccccg 14641465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 296
Target Start/End: Complemental strand, 22955813 - 22955769
Alignment:
Q  252 gacatcccaactaggttggcaccccgtgacaccttcatcctttgc 296  Q
    |||||||||||||||||||||||||| |||| |  ||||||||||    
T  22955813 gacatcccaactaggttggcaccccgagacatcgccatcctttgc 22955769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 296
Target Start/End: Original strand, 23832580 - 23832624
Alignment:
Q  252 gacatcccaactaggttggcaccccgtgacaccttcatcctttgc 296  Q
    |||||||||||||||||||||||||| |||| |  ||||||||||    
T  23832580 gacatcccaactaggttggcaccccgagacatcgccatcctttgc 23832624  T

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Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 277
Target Start/End: Original strand, 24617726 - 24617782
Alignment:
Q  221 ggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccg 277  Q
    |||| ||||||| |||||||| || | ||  ||||||||||||||||||||||||||    
T  24617726 ggagcgtggacatgcatcaagaggaaacaccgacatcccaactaggttggcaccccg 24617782  T

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Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 292
Target Start/End: Original strand, 27962067 - 27962107
Alignment:
Q  252 gacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    |||||||||||||||||||||||||| |||| || ||||||    
T  27962067 gacatcccaactaggttggcaccccgagacatctccatcct 27962107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0595 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0595
Description:

Target: scaffold0595; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 8 - 196
Target Start/End: Complemental strand, 5577 - 5397
Alignment:
Q  8 ttgtcataaagtaaaattgagaaactcttaaatttaagaatttatagttaatttctaatgaatgtatattannnnnnngatctagtctaatgaatatatt 107  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||       ||||  ||||||       | ||||||||||||||||||||    
T  5577 ttgttatagagtaaaattgagaaactcttaaatttaagaatttatagttaat-------gaat--atattatttttttggtctagtctaatgaatatatt 5487  T
Q  108 taaacccttctaattaataacaa---tctaagtttagaaagtcaatgaaacgaaaaggatattaaaggatagtgaatcttttcttcttcaag 196  Q
    ||| |||||||||||||||||||   || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5486 taa-cccttctaattaataacaacaatc-aagtttagaaagtcaatgaaacgaaaaggatattaaaggatagtggatcttttcttcttcaag 5397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 213 - 292
Target Start/End: Original strand, 38242120 - 38242199
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  38242120 ataagcaatgagagtggacaagcatcaagcggtatcatcgacatcccaactaggttggcaccccgagacaccttcatcct 38242199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 215 - 292
Target Start/End: Original strand, 17679701 - 17679778
Alignment:
Q  215 aagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    ||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||| ||||||| ||||||    
T  17679701 aagcaaggagagtggacaaacatcaagcggcatcatcgacatcccaactaggttggcaccccgagacacctccatcct 17679778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 213 - 291
Target Start/End: Complemental strand, 20632557 - 20632479
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcc 291  Q
    ||||||||||||| ||||||| |||||||||| ||||| |||||||||||||||||||||||||| ||||||| |||||    
T  20632557 ataagcaaggagaatggacaaacatcaagcggcatcatcgacatcccaactaggttggcaccccgagacacctccatcc 20632479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 292
Target Start/End: Complemental strand, 20477518 - 20477439
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    |||||||||||||  |||||  ||||||| || ||||| |||||||||||||||||||||||||| || |||| ||||||    
T  20477518 ataagcaaggagaaaggacagacatcaagaggcatcatcgacatcccaactaggttggcaccccgagatacctccatcct 20477439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 220 - 274
Target Start/End: Original strand, 38376856 - 38376910
Alignment:
Q  220 aggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcacc 274  Q
    ||||||||||||| |||||||| |||||||| ||||||| |||||||||||||||    
T  38376856 aggagagtggacatgcatcaagaggtatcatcgacatcctaactaggttggcacc 38376910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 292
Target Start/End: Original strand, 22169951 - 22170030
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    |||||||||||||| ||||| |||||||| || |||||  ||||||||| |||||||||| |||| || |||| ||||||    
T  22169951 ataagcaaggagagaggacaggcatcaagaggcatcatcaacatcccaattaggttggcatcccgagagacctccatcct 22170030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 292
Target Start/End: Original strand, 24524061 - 24524140
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    |||||||||||||  |||||||||||| | |  ||| | |||||||||||||||||||||||||| |||| || ||||||    
T  24524061 ataagcaaggagaaaggacaagcatcaggagacatcgtcgacatcccaactaggttggcaccccgagacatctccatcct 24524140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 274
Target Start/End: Complemental strand, 29216696 - 29216635
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcacc 274  Q
    |||||||||||||| ||||| |||||||| || ||||| |||||||||| || |||||||||    
T  29216696 ataagcaaggagagaggacatgcatcaagaggcatcatcgacatcccaattaagttggcacc 29216635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 274
Target Start/End: Complemental strand, 29329995 - 29329934
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcacc 274  Q
    |||||||||||||| ||||| |||||||| || ||||| |||||||||| || |||||||||    
T  29329995 ataagcaaggagagaggacatgcatcaagaggcatcatcgacatcccaattaagttggcacc 29329934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 292
Target Start/End: Complemental strand, 26916721 - 26916642
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    |||||||||||||  |||||| ||||| | |  ||| | |||||||||||||||||||||||||| |||| || ||||||    
T  26916721 ataagcaaggagaaaggacaaacatcaggagacatcgtcgacatcccaactaggttggcaccccgagacatctccatcct 26916642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 28522938 - 28522883
Alignment:
Q  220 aggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccc 275  Q
    ||||||| |||||  ||||||| || | ||||||||||||||||||||||||||||    
T  28522938 aggagagaggacagacatcaagaggaaacattgacatcccaactaggttggcaccc 28522883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 292
Target Start/End: Complemental strand, 34454979 - 34454904
Alignment:
Q  217 gcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    |||||||||| ||| | |||||||| |  ||||| |||||||||| ||||||||||||||| |||| || ||||||    
T  34454979 gcaaggagagaggagaggcatcaagagacatcatcgacatcccaattaggttggcaccccgagacatctccatcct 34454904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 292
Target Start/End: Original strand, 25971021 - 25971061
Alignment:
Q  252 gacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    |||||||||||||||||||||||||| || |||| ||||||    
T  25971021 gacatcccaactaggttggcaccccgagatacctccatcct 25971061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 28698286 - 28698222
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccg 277  Q
    |||||||||||||| |||||| ||| ||| |||| ||| ||||| |||| |||||||||| ||||    
T  28698286 ataagcaaggagagaggacaaacattaaggggtaacatcgacattccaattaggttggcatcccg 28698222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 292
Target Start/End: Original strand, 40926485 - 40926525
Alignment:
Q  252 gacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    |||||||||||||||||||||||||| || |||| ||||||    
T  40926485 gacatcccaactaggttggcaccccgggaaacctccatcct 40926525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 213 - 297
Target Start/End: Complemental strand, 3736574 - 3736490
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcctttgct 297  Q
    ||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||| ||||||| |||||| ||||    
T  3736574 ataagcaaggagagtggacaaacatcaagcggcatcatcgacatcccaactaggttggcaccccgagacacctccatcctctgct 3736490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 18517771 - 18517707
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccg 277  Q
    |||||||||||||||||||| |||||||| || | ||| ||||||||||||||||||||| ||||    
T  18517771 ataagcaaggagagtggacatgcatcaagaggcaacatcgacatcccaactaggttggcatcccg 18517707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 292
Target Start/End: Complemental strand, 26430350 - 26430271
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    |||| ||||||||| |||||  ||||||| || ||||| ||||||| ||||||||||||||||||| | |||| ||||||    
T  26430350 ataaacaaggagagaggacatacatcaagaggcatcatcgacatcctaactaggttggcaccccgtaatacctccatcct 26430271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 292
Target Start/End: Original strand, 1051303 - 1051381
Alignment:
Q  214 taagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    ||||||||||||| |||||| ||||||| || | ||  ||||||||||||||||||||||| || || |||| ||||||    
T  1051303 taagcaaggagagaggacaaacatcaagagggaacaccgacatcccaactaggttggcacctcgggaaacctccatcct 1051381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 277
Target Start/End: Original strand, 47165871 - 47165935
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccg 277  Q
    |||||||||||  || ||||  ||||||| || ||||| ||||||||||||||||||||||||||    
T  47165871 ataagcaaggaacgtagacagacatcaagaggcatcatcgacatcccaactaggttggcaccccg 47165935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 51661773 - 51661709
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccg 277  Q
    |||||||| |||| ||||||  ||||||| || | ||| ||||||||||||||||||||||||||    
T  51661773 ataagcaatgagaatggacagacatcaagaggcaacatcgacatcccaactaggttggcaccccg 51661709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 292
Target Start/End: Complemental strand, 16038050 - 16037971
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    ||||||||||||||  ||||  ||||||| || ||||| |||||| |||||||||||| |||||| || |||| ||||||    
T  16038050 ataagcaaggagagatgacagacatcaagaggcatcatcgacatctcaactaggttggaaccccgagagacctccatcct 16037971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 276
Target Start/End: Original strand, 19826397 - 19826460
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcacccc 276  Q
    |||||||||||| |  ||||||||| ||| || | ||| |||||||||||||||||||||||||    
T  19826397 ataagcaaggagggaagacaagcattaagaggcaacatcgacatcccaactaggttggcacccc 19826460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 277
Target Start/End: Original strand, 14674169 - 14674227
Alignment:
Q  220 aggagagtggaca-agcatcaagcggtatcattgacatcccaactaggttggcaccccg 277  Q
    ||||||||||||| ||||||||| |   |||| ||||||||||||||||||||||||||    
T  14674169 aggagagtggacacagcatcaagagacgtcatcgacatcccaactaggttggcaccccg 14674227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 273
Target Start/End: Complemental strand, 25760106 - 25760053
Alignment:
Q  220 aggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcac 273  Q
    ||||||| |||||||||||||| || | ||  ||||||||||||||||||||||    
T  25760106 aggagagaggacaagcatcaagaggcaacaccgacatcccaactaggttggcac 25760053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 297
Target Start/End: Complemental strand, 16053546 - 16053462
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcctttgct 297  Q
    ||||||||||||||  ||||  ||||||| || ||||| |||||| ||||||||||| || |||| || |||| |||||| ||||    
T  16053546 ataagcaaggagagatgacagacatcaagaggcatcatcgacatctcaactaggttgacatcccgagaaacctccatcctatgct 16053462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 213 - 292
Target Start/End: Original strand, 21877886 - 21877965
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    ||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||| ||||||| ||||||    
T  21877886 ataagcaaggagagtggacaaacatcaagcggcatcatcgacatcccaactaggttggcaccccgagacacctccatcct 21877965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 277
Target Start/End: Original strand, 5784470 - 5784534
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccg 277  Q
    |||||||||||||||||||| |||||||| || ||||| ||||| ||||||||||||||| ||||    
T  5784470 ataagcaaggagagtggacaggcatcaagaggcatcatcgacattccaactaggttggcatcccg 5784534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 213 - 273
Target Start/End: Original strand, 12851785 - 12851845
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcac 273  Q
    ||||||||||||||||||||  ||||||| || |||||  |||||||||||||||||||||    
T  12851785 ataagcaaggagagtggacagacatcaagaggcatcatcaacatcccaactaggttggcac 12851845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 277
Target Start/End: Original strand, 21711528 - 21711587
Alignment:
Q  218 caaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccg 277  Q
    ||||||||| |||||||||||||| || | ||  ||||||||||||||||||||||||||    
T  21711528 caaggagagaggacaagcatcaagagggaacaccgacatcccaactaggttggcaccccg 21711587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 292
Target Start/End: Complemental strand, 35341980 - 35341903
Alignment:
Q  214 taagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    ||||||||||||| ||||| |||||||| |  ||||| ||||||||||||| |||||||||||| || |||| ||||||    
T  35341980 taagcaaggagagaggacaggcatcaagagtcatcatcgacatcccaacta-gttggcaccccgagatacctccatcct 35341903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 15614822 - 15614766
Alignment:
Q  221 ggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccg 277  Q
    |||||| |||||||||||||| || | ||  ||||||||||||||||||||||||||    
T  15614822 ggagagaggacaagcatcaagagggaacaccgacatcccaactaggttggcaccccg 15614766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 292
Target Start/End: Original strand, 2259390 - 2259461
Alignment:
Q  221 ggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    |||||||||||| |||||||| || | ||  ||||||||||||||||||||| |||| || |||| ||||||    
T  2259390 ggagagtggacatgcatcaagaggaaacaccgacatcccaactaggttggcatcccgggaaacctccatcct 2259461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 292
Target Start/End: Original strand, 28682742 - 28682821
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    |||||||||||  || ||||  ||||||| || ||||| ||||||||||||||||||||| |||| || |||| ||||||    
T  28682742 ataagcaaggaacgtagacagacatcaagaggcatcatcgacatcccaactaggttggcatcccgagagacctccatcct 28682821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 292
Target Start/End: Original strand, 31329262 - 31329341
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    |||||||||||||| ||||| |||||||| || ||||| ||||| |||||||| |||| | |||| || |||| ||||||    
T  31329262 ataagcaaggagagaggacaggcatcaagaggcatcatcgacattccaactagattggtatcccgagatacctccatcct 31329341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 277
Target Start/End: Original strand, 34995435 - 34995498
Alignment:
Q  214 taagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccg 277  Q
    ||||||||||| | ||||| |||||| | |  ||||| ||||||||||||||||||||||||||    
T  34995435 taagcaaggagggaggacaggcatcaggagtcatcatcgacatcccaactaggttggcaccccg 34995498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 292
Target Start/End: Original strand, 39324353 - 39324410
Alignment:
Q  235 catcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    ||||||| || ||||| |||||||||||||||||||||| ||| || |||| ||||||    
T  39324353 catcaagaggcatcatcgacatcccaactaggttggcactccgagagacctccatcct 39324410  T

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Target: scaffold0363 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 213 - 297
Target Start/End: Original strand, 5281 - 5365
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcctttgct 297  Q
    ||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||| || ||||||| |||||| ||||    
T  5281 ataagcaaggagagtggacaaacatcaagcggcatcatcgacatcccaactaggttggcacctcgagacacctccatcctctgct 5365  T

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Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 213 - 297
Target Start/End: Complemental strand, 14413430 - 14413346
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcctttgct 297  Q
    ||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||| || ||||||| |||||| ||||    
T  14413430 ataagcaaggagagtggacaaacatcaagcggcatcatcgacatcccaactaggttggcacctcgagacacctccatcctctgct 14413346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 213 - 292
Target Start/End: Complemental strand, 21593276 - 21593197
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    |||||||||||||| ||||| |||||||| || ||||| ||||| |||||||||||||||||||| || |||||||||||    
T  21593276 ataagcaaggagagaggacaggcatcaagaggcatcatcgacattccaactaggttggcaccccgagagaccttcatcct 21593197  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 290
Target Start/End: Complemental strand, 16890066 - 16889990
Alignment:
Q  214 taagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatc 290  Q
    ||||||||||||| ||||| |||||| | |  ||||| |||||||||||||||||||||||||| || |||| ||||    
T  16890066 taagcaaggagagaggacaggcatcaggagtcatcatcgacatcccaactaggttggcaccccgagatacctccatc 16889990  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 216 - 292
Target Start/End: Complemental strand, 23595467 - 23595391
Alignment:
Q  216 agcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    ||||||||||| ||||| |||||||| || ||||| ||||||||||||||||||| |||| | || |||| ||||||    
T  23595467 agcaaggagagaggacacgcatcaagaggcatcatcgacatcccaactaggttggtaccctgagagacctccatcct 23595391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 216 - 292
Target Start/End: Complemental strand, 23604389 - 23604313
Alignment:
Q  216 agcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    ||||||||||| ||||| |||||||| || ||||| ||||||||||||||||||| |||| | || |||| ||||||    
T  23604389 agcaaggagagaggacacgcatcaagaggcatcatcgacatcccaactaggttggtaccctgagagacctccatcct 23604313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 297
Target Start/End: Complemental strand, 16290946 - 16290865
Alignment:
Q  216 agcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcctttgct 297  Q
    ||||||||||  |||||| ||||||| || | ||  |||||||||||||||||||||||||| || |||| |||||| ||||    
T  16290946 agcaaggagaaaggacaaacatcaagaggcaacaccgacatcccaactaggttggcaccccgggaaacctccatcctatgct 16290865  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 290
Target Start/End: Complemental strand, 29840954 - 29840877
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatc 290  Q
    |||||||| ||||||||||| ||||||||    | ||| |||||||||||||||||||||||||| || |||| ||||    
T  29840954 ataagcaaagagagtggacatgcatcaagaaacaacatcgacatcccaactaggttggcaccccgagaaacctccatc 29840877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 292
Target Start/End: Complemental strand, 23124068 - 23124009
Alignment:
Q  233 agcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    ||||||||| ||| || | |||||||||||||||||||||||||| || |||| ||||||    
T  23124068 agcatcaagaggtgtcgtcgacatcccaactaggttggcaccccgagatacctccatcct 23124009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 292
Target Start/End: Complemental strand, 41600808 - 41600738
Alignment:
Q  222 gagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    ||||||||||| |||||||| || | ||| || ||||||||||| ||||||||||| || || ||||||||    
T  41600808 gagagtggacatgcatcaagaggcaacatcgatatcccaactagattggcaccccgagaaactttcatcct 41600738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 292
Target Start/End: Complemental strand, 6001513 - 6001436
Alignment:
Q  215 aagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    |||||||||||| |||||| ||| ||| || | ||| ||||| |||||||||||| |||| || || |||||||||||    
T  6001513 aagcaaggagagaggacaaacattaagaggcaacatcgacattccaactaggttgacaccgcgagaaaccttcatcct 6001436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 274
Target Start/End: Complemental strand, 17274803 - 17274742
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcacc 274  Q
    ||||||||||||| ||||||  ||||||| || | ||| |||||||||||| ||||||||||    
T  17274803 ataagcaaggagaatggacagacatcaagaggcaacatcgacatcccaacttggttggcacc 17274742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 292
Target Start/End: Complemental strand, 26867541 - 26867472
Alignment:
Q  223 agagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    |||| ||||| || ||||| || ||||| ||||||||||||||||||||||| || || |||| ||||||    
T  26867541 agagaggacaggcttcaagaggcatcatcgacatcccaactaggttggcacctcgggaaacctccatcct 26867472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 277
Target Start/End: Original strand, 10568285 - 10568349
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccg 277  Q
    |||||||||||||| |||||  ||||||| || | ||| ||| | ||||||||||||||||||||    
T  10568285 ataagcaaggagagaggacagacatcaagaggcaacatcgacttaccaactaggttggcaccccg 10568349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 11837193 - 11837153
Alignment:
Q  252 gacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    |||||||||||||||||||||||||| || |||| ||||||    
T  11837193 gacatcccaactaggttggcaccccgagatacctccatcct 11837153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 277
Target Start/End: Original strand, 45268820 - 45268884
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccg 277  Q
    |||||||||||||| ||||| |||||||| || | ||| ||| | ||||| ||||||||||||||    
T  45268820 ataagcaaggagagaggacaggcatcaagaggcaacatcgacttaccaaccaggttggcaccccg 45268884  T

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Target: scaffold0093 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 213 - 285
Target Start/End: Complemental strand, 16117 - 16045
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacacct 285  Q
    ||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||| ||| |||||||    
T  16117 ataagcaaggagagtggacaaacatcaagcggcatcatcgacatcccaactaggttggcactccgagacacct 16045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 213 - 292
Target Start/End: Original strand, 55761 - 55840
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    ||||||||||||||||||||  |||||||||| ||||| ||||||||||||||||||||||||||  |||||| ||||||    
T  55761 ataagcaaggagagtggacagacatcaagcggcatcatcgacatcccaactaggttggcaccccgacacacctccatcct 55840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 103799 - 103735
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccg 277  Q
    ||||||||||||| |||||   ||||||| || | ||| ||||||||||||||||||||||||||    
T  103799 ataagcaaggagaatggaccgacatcaagaggcaacatcgacatcccaactaggttggcaccccg 103735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 213 - 292
Target Start/End: Original strand, 3007268 - 3007347
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    ||||||||||||||||||||| |||||| ||||||||| | ||||||||||||||||| |||||| ||||||| ||||||    
T  3007268 ataagcaaggagagtggacaaacatcaaacggtatcatcgtcatcccaactaggttggtaccccgagacacctccatcct 3007347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 213 - 292
Target Start/End: Original strand, 1924639 - 1924718
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    |||| ||||||||||||| || |||||||  ||||||| |||||||||||||||||||||||||| ||||||| ||||||    
T  1924639 ataatcaaggagagtggaaaaacatcaagatgtatcatcgacatcccaactaggttggcaccccgagacacctccatcct 1924718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 34512146 - 34512077
Alignment:
Q  220 aggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcat 289  Q
    ||||||||||||| |||||||| || ||||| |||||||||||||||||||||||||| || ||||||||    
T  34512146 aggagagtggacaggcatcaagaggcatcatcgacatcccaactaggttggcaccccgggagaccttcat 34512077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 277
Target Start/End: Original strand, 11485189 - 11485246
Alignment:
Q  220 aggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccg 277  Q
    |||| |||||||| |||||||| |||||| | ||||||||||||||||||||||||||    
T  11485189 aggaaagtggacatgcatcaagaggtatcttcgacatcccaactaggttggcaccccg 11485246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 292
Target Start/End: Original strand, 8667083 - 8667161
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    |||||||||||||||||||| |||||||| || | ||| ||||||| ||||||||||| |||||| || |||| ||||||    
T  8667083 ataagcaaggagagtggacaggcatcaagaggcaacatcgacatcctaactaggttgg-accccgagaaacctccatcct 8667161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 277
Target Start/End: Original strand, 44673660 - 44673724
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccg 277  Q
    ||||||||||||| |||| |  ||||||| || | ||| ||||||||||||||||||||||||||    
T  44673660 ataagcaaggagaatggatagacatcaagaggcaacatcgacatcccaactaggttggcaccccg 44673724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 276
Target Start/End: Original strand, 19904598 - 19904661
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcacccc 276  Q
    |||| |||||||||||||   |||||||| |  ||||| |||||||||||||||||||||||||    
T  19904598 ataaacaaggagagtggaagggcatcaagagacatcatcgacatcccaactaggttggcacccc 19904661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 277
Target Start/End: Original strand, 18025395 - 18025453
Alignment:
Q  220 aggagagtggaca-agcatcaagcggtatcattgacatcccaactaggttggcaccccg 277  Q
    ||||||||||||| ||||||||| |   |||| ||||||||||||||||||||||||||    
T  18025395 aggagagtggacacagcatcaagagacgtcatcgacatcccaactaggttggcaccccg 18025453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 292
Target Start/End: Complemental strand, 18234334 - 18234256
Alignment:
Q  214 taagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    ||||||||||||| ||||| |||| | | |  ||||| ||||| |||||||||||||||||||| || |||| ||||||    
T  18234334 taagcaaggagagaggacaggcatgaggagtcatcatcgacattccaactaggttggcaccccgagatacctccatcct 18234256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 274
Target Start/End: Complemental strand, 7190167 - 7190106
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcacc 274  Q
    |||||||||||  || ||||  ||||||| || ||||| |||||||||||||||||||||||    
T  7190167 ataagcaaggaacgtagacagacatcaagaggcatcatcgacatcccaactaggttggcacc 7190106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 290
Target Start/End: Original strand, 33040559 - 33040636
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatc 290  Q
    |||||||| ||||||| ||| | |||||| |  | ||| |||||||||||||||||||||||||| || |||| ||||    
T  33040559 ataagcaaagagagtgaacatgtatcaagagacaacatcgacatcccaactaggttggcaccccgagaaacctccatc 33040636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 213 - 292
Target Start/End: Complemental strand, 16280524 - 16280445
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    ||||||||||||||||||||| |||||||||| ||||| |||||||||| ||| ||||||||||| ||||||| ||||||    
T  16280524 ataagcaaggagagtggacaaacatcaagcggcatcatcgacatcccaattagattggcaccccgagacacctccatcct 16280445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 214 - 292
Target Start/End: Complemental strand, 21813255 - 21813177
Alignment:
Q  214 taagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    ||||||||||| ||||| || |||||||||| ||||| |||||||||||||||||||||||||| ||||||| ||||||    
T  21813255 taagcaaggagtgtggaaaaacatcaagcggcatcatcgacatcccaactaggttggcaccccgagacacctccatcct 21813177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 214 - 290
Target Start/End: Original strand, 10423787 - 10423863
Alignment:
Q  214 taagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatc 290  Q
    |||||||||||||||||||||||||||| || | ||| |||||||||||||||||||||||||| || |||| ||||    
T  10423787 taagcaaggagagtggacaagcatcaagaggcaacatcgacatcccaactaggttggcaccccgagaaacctccatc 10423863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 13309371 - 13309443
Alignment:
Q  220 aggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    ||||||||||||| |||||||| || ||||| |||||||||||||||||||||||||| || |||| ||||||    
T  13309371 aggagagtggacaggcatcaagaggcatcatcgacatcccaactaggttggcaccccgagagacctccatcct 13309443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 292
Target Start/End: Original strand, 27035838 - 27035916
Alignment:
Q  214 taagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    |||| |||||||| |||||||||||||| || ||||| ||||||||||||||||||||| |||| || |||| ||||||    
T  27035838 taagtaaggagagaggacaagcatcaagaggcatcatcgacatcccaactaggttggcatcccgagagacctccatcct 27035916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 296
Target Start/End: Complemental strand, 24961941 - 24961858
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcctttgc 296  Q
    |||||||||||||| |||||  ||||| | |  ||||| |||||||||||||||||||||||||| || |||||| ||||||||    
T  24961941 ataagcaaggagagaggacagacatcaggagacatcatcgacatcccaactaggttggcaccccgagataccttcctcctttgc 24961858  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 275
Target Start/End: Complemental strand, 35877067 - 35877005
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccc 275  Q
    ||||||||||| ||||||||| |||||||  | | ||| ||||||||||||||||||||||||    
T  35877067 ataagcaaggatagtggacaaacatcaagaagcaacatcgacatcccaactaggttggcaccc 35877005  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 21464857 - 21464784
Alignment:
Q  220 aggagagtggaca-agcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    ||||||||||||| ||||||||| |   |||| |||||||||||||||||||||||||| || |||| ||||||    
T  21464857 aggagagtggacacagcatcaagagacgtcatcgacatcccaactaggttggcaccccgagatacctccatcct 21464784  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 274
Target Start/End: Original strand, 2583065 - 2583125
Alignment:
Q  214 taagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcacc 274  Q
    ||||||||||||| |||||  ||||||| || ||||| ||||||||||||| |||||||||    
T  2583065 taagcaaggagagaggacagacatcaagaggcatcatcgacatcccaactaagttggcacc 2583125  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 292
Target Start/End: Complemental strand, 23487544 - 23487465
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    |||||||||||||| ||||| |||||| | || ||||| ||||| |||||||| |||| |||||| || |||| ||||||    
T  23487544 ataagcaaggagagaggacaggcatcaggaggcatcatcgacattccaactagattggtaccccgagatacctccatcct 23487465  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 277
Target Start/End: Original strand, 33064806 - 33064869
Alignment:
Q  214 taagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccg 277  Q
    ||||| |||||| |||||| |||||||| || | ||  ||||||||||||||||||||||||||    
T  33064806 taagccaggagattggacaggcatcaaggggaagcaacgacatcccaactaggttggcaccccg 33064869  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 269
Target Start/End: Original strand, 20808741 - 20808797
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttg 269  Q
    |||||||||||||| ||||| |||||||| |  ||||| ||||||||||||| ||||    
T  20808741 ataagcaaggagagaggacaggcatcaagagacatcatcgacatcccaactaagttg 20808797  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 292
Target Start/End: Original strand, 22522822 - 22522862
Alignment:
Q  252 gacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    |||||||||||||||||||||||||| || |||| ||||||    
T  22522822 gacatcccaactaggttggcaccccgagatacctccatcct 22522862  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 292
Target Start/End: Original strand, 34528943 - 34528983
Alignment:
Q  252 gacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    |||||||||||||||||||||||||| || |||| ||||||    
T  34528943 gacatcccaactaggttggcaccccgggaaacctccatcct 34528983  T

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Target: scaffold0265 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 214 - 292
Target Start/End: Original strand, 19554 - 19632
Alignment:
Q  214 taagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    ||||||||||| ||||| || |||||||||| ||||| |||||||||||||||||||||||||| ||||||| ||||||    
T  19554 taagcaaggagtgtggaaaaacatcaagcggcatcatcgacatcccaactaggttggcaccccgagacacctccatcct 19632  T

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Target: scaffold0292 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0292
Description:

Target: scaffold0292; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 21313 - 21249
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccg 277  Q
    |||||||||||||||||||| |||||||| || ||||| ||||||||||||||||||||||||||    
T  21313 ataagcaaggagagtggacaggcatcaagaggcatcatcgacatcccaactaggttggcaccccg 21249  T

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Target: scaffold0238 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 213 - 292
Target Start/End: Complemental strand, 4532 - 4453
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    |||||||||||  || |||| |||||||| |||||||||||||||||||||||||||||||| || || |||| ||||||    
T  4532 ataagcaaggaacgtagacaggcatcaagaggtatcattgacatcccaactaggttggcacctcgagagacctccatcct 4453  T

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Target: scaffold0029 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 213 - 292
Target Start/End: Complemental strand, 129514 - 129435
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    ||||||| |||||||||| || ||||||| |  ||||| |||||||||||||||||||||||||| ||||||| ||||||    
T  129514 ataagcacggagagtggaaaaacatcaagagtcatcatcgacatcccaactaggttggcaccccgagacacctccatcct 129435  T

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Target: scaffold0002 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 213 - 292
Target Start/End: Complemental strand, 307331 - 307252
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    ||||||| |||||||||| || ||||||| |  ||||| |||||||||||||||||||||||||| ||||||| ||||||    
T  307331 ataagcacggagagtggaaaaacatcaagagtcatcatcgacatcccaactaggttggcaccccgagacacctccatcct 307252  T

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Target: scaffold0001 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 213 - 292
Target Start/End: Original strand, 20657 - 20736
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    ||||||| | || |||||||| |||||||||  ||||| |||||||||||||||||||||||||| ||||||| ||||||    
T  20657 ataagcaggaagtgtggacaaacatcaagcgtcatcatcgacatcccaactaggttggcaccccgagacacctccatcct 20736  T

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Target: scaffold0009 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 297
Target Start/End: Original strand, 1483 - 1563
Alignment:
Q  217 gcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcctttgct 297  Q
    |||||||||| |||||||||||||| || | ||  |||||||||||||||||||||||||| || |||| |||||| ||||    
T  1483 gcaaggagagaggacaagcatcaagaggcaacaccgacatcccaactaggttggcaccccgggaaacctccatcctatgct 1563  T

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Target: scaffold0437 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0437
Description:

Target: scaffold0437; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 292
Target Start/End: Original strand, 14315 - 14394
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    |||||||||||||| |||||  ||||||| || ||||| ||||||||||||||||||||| |||| || |||| ||||||    
T  14315 ataagcaaggagagaggacagacatcaagaggcatcatcgacatcccaactaggttggcatcccgagagacctccatcct 14394  T

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Target: scaffold0437; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 11499 - 11443
Alignment:
Q  221 ggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccg 277  Q
    |||||| |||||| ||||||| || | ||  ||||||||||||||||||||||||||    
T  11499 ggagagaggacaaacatcaagagggaacaccgacatcccaactaggttggcaccccg 11443  T

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Target: scaffold0068 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 2382 - 2323
Alignment:
Q  218 caaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccg 277  Q
    ||||||||| |||||||||||||| || | ||  ||||||||||||||||||||||||||    
T  2382 caaggagagaggacaagcatcaagagggaacaccgacatcccaactaggttggcaccccg 2323  T

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Target: scaffold0020 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 123836 - 123909
Alignment:
Q  220 aggagagtggaca-agcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    ||||||||||||| | ||||||| |  ||||| |||||||||||||||||||||||||| || |||| ||||||    
T  123836 aggagagtggacacaacatcaagagacatcatcgacatcccaactaggttggcaccccgagatacctccatcct 123909  T

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Target: scaffold0134 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 292
Target Start/End: Complemental strand, 2574 - 2495
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    |||||||||||||  ||||| |||||| | |  ||| | |||||||||||||||||||||||||| |||| || ||||||    
T  2574 ataagcaaggagaaaggacatgcatcaggagacatcgtcgacatcccaactaggttggcaccccgagacatctccatcct 2495  T

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Target: scaffold0553 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 7490 - 7563
Alignment:
Q  220 aggagagtggaca-agcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    ||||||||||||| ||||||||| |   ||||  ||||||||||||||||||||||||| || |||| ||||||    
T  7490 aggagagtggacacagcatcaagagacgtcatctacatcccaactaggttggcaccccgagatacctccatcct 7563  T

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Target: scaffold0291 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 292
Target Start/End: Original strand, 21881 - 21938
Alignment:
Q  235 catcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    ||||||| || ||||| ||||||||||||||||||||| |||| || |||| ||||||    
T  21881 catcaagaggcatcatcgacatcccaactaggttggcatcccgagagacctccatcct 21938  T

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Target: scaffold0125 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 292
Target Start/End: Original strand, 35529 - 35574
Alignment:
Q  247 tcattgacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    |||| |||||||||||||||||||||||||| || |||| ||||||    
T  35529 tcatcgacatcccaactaggttggcaccccgagatacctccatcct 35574  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 290
Target Start/End: Complemental strand, 173961 - 173884
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatc 290  Q
    |||||||||| ||| |||||  ||||| | |  ||||| |||||||||||||||||||||||||| || |||| ||||    
T  173961 ataagcaaggcgagaggacagacatcaggagacatcatcgacatcccaactaggttggcaccccgagatacctccatc 173884  T

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Target: scaffold1821 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1821
Description:

Target: scaffold1821; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 296
Target Start/End: Complemental strand, 1034 - 990
Alignment:
Q  252 gacatcccaactaggttggcaccccgtgacaccttcatcctttgc 296  Q
    |||||||||||||||||||||||||| |||| |  ||||||||||    
T  1034 gacatcccaactaggttggcaccccgagacatcgccatcctttgc 990  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 12727894 - 12727830
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccg 277  Q
    |||||||||||  || ||||  ||||||| || ||||| ||||||||||||||||||||| ||||    
T  12727894 ataagcaaggaacgtagacagacatcaagaggcatcatcgacatcccaactaggttggcatcccg 12727830  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 297
Target Start/End: Original strand, 18270282 - 18270365
Alignment:
Q  213 ataagcaaggagagtggacaagcatcaagcggtatcattgacatcccaactaggttggcaccccgtgacaccttcatcctttgct 297  Q
    |||| ||||||||| |||||| ||||||  |  ||||| ||||||||||||| |||||||||||| || |||| |||||| ||||    
T  18270282 ataaacaaggagagaggacaaacatcaat-gacatcatcgacatcccaactaagttggcaccccgagagacctccatcctatgct 18270365  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 292
Target Start/End: Original strand, 20936836 - 20936876
Alignment:
Q  252 gacatcccaactaggttggcaccccgtgacaccttcatcct 292  Q
    |||||||||||||||||||||||||| || |||| ||||||    
T  20936836 gacatcccaactaggttggcaccccgagatacctccatcct 20936876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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