View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16690_low_1 (Length: 632)
Name: NF16690_low_1
Description: NF16690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16690_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 337 - 628
Target Start/End: Complemental strand, 41315200 - 41314909
Alignment:
| Q |
337 |
tagttgagaagaaaacaaagaacattttagaaaatcttgatctatcaaacttatggtcatcggataagaaaacaatagatgatcaaatgtcaccgcatca |
436 |
Q |
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| T |
41315200 |
tagttgagaagaaaacaaagaacattttagaaaatcttgatctatcaaacttatggtcatcggataagaaaacaatagatgatcaaatgtcaccgcatca |
41315101 |
T |
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| Q |
437 |
cctcaaaaatctccaccgtctccttttcaaaacagctgagtattctccccgtaacacgcttggcagtcattggagagaataccatggctgcaatgattgg |
536 |
Q |
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| T |
41315100 |
cctcaaaaatctccaccgtctccttttcaaaacagctgagtattctccccgtaacacgcttggcagtcattggagagaataccatggctgcaatgattgg |
41315001 |
T |
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| Q |
537 |
aaaggaatgttagatcctctcgacgagaatcttcgtcgagaggtagttcgttatggtgaatttgtacaagatgcgtatcattcttctcactc |
628 |
Q |
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| T |
41315000 |
aaaggaatgttagatcctctcgacgagaatcttcgtcgagaggtagttcgttatggtgaatttgtacaagacgcgtatcattcttttcactc |
41314909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 41315560 - 41315263
Alignment:
| Q |
1 |
ccaactacatccatttcatttcagactaattggttattttcaagtagcttagcct-gcgggaggagaagaacaagacagcacatcacaataaaattctca |
99 |
Q |
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| T |
41315560 |
ccaactacatccattccatttcagactaattggttattttcaagtagcttagccttgcgggaggacaagaacaagacagcacatcacaataaaattctca |
41315461 |
T |
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| Q |
100 |
ttcctctgctgtctgtct--------tcaacattatgatgatcaattcaactctaccatcacacaaccttaacatgttccaaactagacaacaatccacc |
191 |
Q |
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| T |
41315460 |
ttcctctgctgtctgtctgtctgtcttcaacattatgatgatcaattcaactctaccatcacacaaccttaacatgttccaaactagacaacaatccacc |
41315361 |
T |
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| Q |
192 |
ttcacatgccgatcatcctcttccattaacaaccaactcccacctcgtaaaccactttcttccaccaagttacatctctctaatcttgataaatttct |
289 |
Q |
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| T |
41315360 |
ttcacatgccgatcatcctcttccattaataaccaactcccacctcgtaaaccactttcttccaccaagttacatctctctaatcttgataaatttct |
41315263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 39871150 - 39871195
Alignment:
| Q |
5 |
ctacatccatttcatttcagactaattggttattttcaagtagctt |
50 |
Q |
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| T |
39871150 |
ctacatccatttcatttcagactagttggttaatttcaagtagctt |
39871195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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