View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16690_low_2 (Length: 455)

Name: NF16690_low_2
Description: NF16690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16690_low_2
NF16690_low_2
[»] chr6 (10 HSPs)
chr6 (10-455)||(11671826-11672271)
chr6 (17-455)||(11629897-11630337)
chr6 (253-455)||(11619950-11620152)
chr6 (24-206)||(11620374-11620556)
chr6 (271-455)||(11708553-11708737)
chr6 (271-455)||(11664797-11664981)
chr6 (271-372)||(11737824-11737925)
chr6 (138-201)||(11708418-11708481)
chr6 (271-384)||(11757997-11758110)
chr6 (271-384)||(12091291-12091404)
[»] scaffold0196 (1 HSPs)
scaffold0196 (14-455)||(14545-14989)
[»] scaffold0019 (2 HSPs)
scaffold0019 (235-455)||(6677-6897)
scaffold0019 (45-206)||(6478-6639)
[»] chr8 (1 HSPs)
chr8 (24-385)||(16391465-16391828)
[»] chr1 (1 HSPs)
chr1 (271-455)||(44813362-44813546)


Alignment Details
Target: chr6 (Bit Score: 434; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 10 - 455
Target Start/End: Original strand, 11671826 - 11672271
Alignment:
Q  10 agaagaatctgttcattacctgcaagtaaattgcaacataaaccattggaatagcaagaaccaagacttgccaagtgacaactgccaaaactgttagact 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11671826 agaagaatctgttcattacctgcaagtaaattgcaacataaaccattggaatagcaagaaccaagacttgccaagtgacaactgccaaaactgttagact 11671925  T
Q  110 ggaataaaatactagagttcctgccacagcaaaagtgaggctgaatgggatgtcaatatccataatactcagatcagatgagacctaaacaatgaaaccg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  11671926 ggaataaaatactagagttcctgccacagcaaaagtgaggctgaatgggatgtcagtatccataatgctcagatcagatgagacctaaacaatgaaaccg 11672025  T
Q  210 gttaaaagactatttatttcgatacatttcgtaggaaggaaagtaattgtttattaaactcaccctactaagtatccttcctgatggtgtagaatcataa 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11672026 gttaaaagactatttatttcgatacatttcgtaggaaggaaagtaattgtttattaaactcaccctactaagtatccttcctgatggtgtagaatcataa 11672125  T
Q  310 aaggacatgggtgcacgaaagagggagttcatcaactgtgaaaataaattcttcgatgattgaagacccaaagcaaccaaaagtagacttctgatcagta 409  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11672126 aaggacatgggtgcacgaaagagggagttcatcaacagtgaaaataaattcttcgatgattgaagacccaaagcaaccaaaagtagacttctgatcagta 11672225  T
Q  410 agaaaaatgttgaagaaacaccgataaggaaataaactaaaatcaa 455  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  11672226 agaaaaatgttgaagaaacaccgataaggaaataaactaaaatcaa 11672271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 17 - 455
Target Start/End: Original strand, 11629897 - 11630337
Alignment:
Q  17 tctgttcattacctgcaagtaaattgcaacataaaccattggaatagcaagaaccaagacttgccaagtgacaactgccaaaactgttagactggaataa 116  Q
    |||||| |||||||||| |  |||||||||| |||||||||| ||||| | || |||||||||||| | ||| |||||||||||||| ||||| ||| ||    
T  11629897 tctgtttattacctgcatgcgaattgcaacacaaaccattggtatagccacaatcaagacttgccatgagacgactgccaaaactgtcagactagaacaa 11629996  T
Q  117 aatactagagttcctgccacagcaaaagtgaggctgaatgggatgtcaatatccataatactcagatcagatgagacctaaacaatgaaaccg---gtta 213  Q
    || || |  || ||| |||  ||||| |||||||| ||||| | ||| | ||||||||| |||||||||||||||||||||||| |||||      ||||    
T  11629997 aaaacgattgtgcctcccattgcaaacgtgaggctaaatggaaggtcgagatccataatgctcagatcagatgagacctaaaca-tgaaaataatagtta 11630095  T
Q  214 aaagactatttatttcgatacatttcgtaggaaggaaagtaattgtttattaaactcaccctactaagtatccttcctgatggtgtagaatcataaaagg 313  Q
     ||   ||||| ||    |  ||||| | ||||||||| || |||||||||   |||||||||||||||||||||||  ||||||||||||| ||||| |    
T  11630096 gaatgttatttcttctcttgtatttcattggaaggaaaatagttgtttatttttctcaccctactaagtatccttcccaatggtgtagaatcgtaaaatg 11630195  T
Q  314 acatgggtgcacgaaagagggagttcatcaactgtgaaaataaattcttcgatgattgaagacccaaagcaaccaaaagtagacttctgatcagtaagaa 413  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||| ||| | ||||||||||||  | |  |||||    
T  11630196 acatcggtgcacgaaagagggagttcatcaactgtgaaaataaattttttgatgattgatgacccaaagaaactacaagtagacttctagtgaacaagaa 11630295  T
Q  414 aaatgttgaagaaacaccgataaggaaataaactaaaatcaa 455  Q
    || |  |||| ||  ||| || ||||||||||||||||||||    
T  11630296 aactactgaaaaagaaccaattaggaaataaactaaaatcaa 11630337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 253 - 455
Target Start/End: Complemental strand, 11620152 - 11619950
Alignment:
Q  253 taattgtttattaaactcaccctactaagtatccttcctgatggtgtagaatcataaaaggacatgggtgcacgaaagagggagttcatcaactgtgaaa 352  Q
    |||||||||||||| || |||||| |||| |  |||||| |||||||||| || ||||| |||||||||||||| |||||||||||||||||||||||||    
T  11620152 taattgtttattaagcttaccctagtaaggactcttcctaatggtgtagagtcgtaaaatgacatgggtgcacggaagagggagttcatcaactgtgaaa 11620053  T
Q  353 ataaattcttcgatgattgaagacccaaagcaaccaaaagtagacttctgatcagtaagaaaaatgttgaagaaacaccgataaggaaataaactaaaat 452  Q
    ||||||  || || ||||||||||| |||||||| | |||||||| |||||| |  ||||||| | ||||| ||||||| |||| |||||||||||||||    
T  11620052 ataaatcttttgacgattgaagacctaaagcaactacaagtagacatctgatgaacaagaaaattattgaaaaaacaccaataacgaaataaactaaaat 11619953  T
Q  453 caa 455  Q
    |||    
T  11619952 caa 11619950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 24 - 206
Target Start/End: Complemental strand, 11620556 - 11620374
Alignment:
Q  24 attacctgcaagtaaattgcaacataaaccattggaatagcaagaaccaagacttgccaagtgacaactgccaaaactgttagactggaataaaatacta 123  Q
    ||||||||||||  || |||||||||||||||||| ||||| | || |||||||| ||| |||||||| ||||||||| | ||| | ||||| |  ||||    
T  11620556 attacctgcaagcgaaatgcaacataaaccattggtatagccacaatcaagactttccatgtgacaacagccaaaactataagattagaatagagaacta 11620457  T
Q  124 gagttcctgccacagcaaaagtgaggctgaatgggatgtcaatatccataatactcagatcagatgagacctaaacaatgaaa 206  Q
     ||| ||  |||| |||||| ||||| | ||||| |||||||||||||||||||| |||||||||||||||||||||| ||||    
T  11620456 tagtgccccccacggcaaaactgaggataaatggaatgtcaatatccataatactaagatcagatgagacctaaacaaggaaa 11620374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 271 - 455
Target Start/End: Original strand, 11708553 - 11708737
Alignment:
Q  271 accctactaagtatccttcctgatggtgtagaatcataaaaggacatgggtgcacgaaagagggagttcatcaactgtgaaaataaattcttcgatgatt 370  Q
    |||||||| |||||||||||  |||||||||  |||||||| ||||| ||||||||||||||||||||||||||||||  ||||||    || || ||||    
T  11708553 accctacttagtatccttcccaatggtgtagcgtcataaaaagacatcggtgcacgaaagagggagttcatcaactgtagaaataagaattttgaggatt 11708652  T
Q  371 gaagacccaaagcaaccaaaagtagacttctgatcagtaagaaaaatgttgaagaaacaccgataaggaaataaactaaaatcaa 455  Q
    |||||||||||||||| | || |||||||||  |||  | ||||||||  |||||| | || |  ||||| ||||||||||||||    
T  11708653 gaagacccaaagcaactacaaatagacttctagtcaacatgaaaaatgccgaagaagctccaagtaggaagtaaactaaaatcaa 11708737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 271 - 455
Target Start/End: Complemental strand, 11664981 - 11664797
Alignment:
Q  271 accctactaagtatccttcctgatggtgtagaatcataaaaggacatgggtgcacgaaagagggagttcatcaactgtgaaaataaattcttcgatgatt 370  Q
    |||||||| |||||||||||  |||||||||  |||||||| ||||| ||||||||||||||||| ||||||||  || |||||||||  || || ||||    
T  11664981 accctacttagtatccttcccaatggtgtagcgtcataaaaagacattggtgcacgaaagagggacttcatcaatcgtaaaaataaatattttgaagatt 11664882  T
Q  371 gaagacccaaagcaaccaaaagtagacttctgatcagtaagaaaaatgttgaagaaacaccgataaggaaataaactaaaatcaa 455  Q
    ||||||| |||| ||| | || ||||||||  ||||  | |||||||| ||||||||  || || ||| |||| |||||||||||    
T  11664881 gaagacctaaagaaactacaaatagacttcgtatcaacatgaaaaatgctgaagaaaatccaatcagggaatatactaaaatcaa 11664797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 271 - 372
Target Start/End: Original strand, 11737824 - 11737925
Alignment:
Q  271 accctactaagtatccttcctgatggtgtagaatcataaaaggacatgggtgcacgaaagagggagttcatcaactgtgaaaataaattcttcgatgatt 370  Q
    ||||||||||||||||||||  |||||||||| |||||||| ||||| ||||| ||||| ||||||||||| || |||||||||||||  || |||||||    
T  11737824 accctactaagtatccttcccaatggtgtagagtcataaaacgacattggtgctcgaaaaagggagttcattaattgtgaaaataaatattttgatgatt 11737923  T
Q  371 ga 372  Q
    ||    
T  11737924 ga 11737925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 11708418 - 11708481
Alignment:
Q  138 gcaaaagtgaggctgaatgggatgtcaatatccataatactcagatcagatgagacctaaacaa 201  Q
    |||||||||||||| ||||||||||||| ||||||||| |||||||||||||| ||||||||||    
T  11708418 gcaaaagtgaggctaaatgggatgtcaagatccataatgctcagatcagatgaaacctaaacaa 11708481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 384
Target Start/End: Complemental strand, 11758110 - 11757997
Alignment:
Q  271 accctactaagtatccttcctgatggtgtagaatcataaaaggacatgggtgcacgaaagagggagttcatcaactgtgaaaataaattcttcgatgatt 370  Q
    ||||||||||||||||||||  | ||||| |  ||||| || ||||| |||||| |||| || || ||||| ||||||  |||||||  ||| |||||||    
T  11758110 accctactaagtatccttcccaagggtgtggtgtcatagaaagacattggtgcatgaaaaagagaattcattaactgtctaaataaaacctttgatgatt 11758011  T
Q  371 gaagacccaaagca 384  Q
    |||  |||||||||    
T  11758010 gaattcccaaagca 11757997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 384
Target Start/End: Original strand, 12091291 - 12091404
Alignment:
Q  271 accctactaagtatccttcctgatggtgtagaatcataaaaggacatgggtgcacgaaagagggagttcatcaactgtgaaaataaattcttcgatgatt 370  Q
    ||||||||||||||||||||  ||||||| |  ||||| || ||||| |||||| |||| || || || || || |||  |||||||  |||||||||||    
T  12091291 accctactaagtatccttcccaatggtgtggtgtcatagaaagacattggtgcatgaaaaagagaatttattaattgtccaaataaaaccttcgatgatt 12091390  T
Q  371 gaagacccaaagca 384  Q
    |||  |||||||||    
T  12091391 gaattcccaaagca 12091404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 14 - 455
Target Start/End: Complemental strand, 14989 - 14545
Alignment:
Q  14 gaatctgttcattacctgcaagtaaattgcaacataaaccattggaatagcaagaaccaagacttgccaagtgacaactgccaaaactgttagactggaa 113  Q
    |||| ||||||||||||||| |  ||| |||||||||| |||||| ||||| |  | |||||||||||| | |||||| ||||||||||||||||| |||    
T  14989 gaatttgttcattacctgcatgagaatagcaacataaatcattggtatagccactatcaagacttgccatgagacaacagccaaaactgttagactagaa 14890  T
Q  114 taaaatactagagttcctgccacagcaaaagtgaggctgaatgggatgtcaatatccataatactcagatcagatgagacctaaacaatgaaaccg---g 210  Q
     |||| || |  |   || ||||||||||||||||||| ||||| ||||| | ||| ||||| |||||||||||||||||||||||| || ||      |    
T  14889 aaaaaaacaattggagctcccacagcaaaagtgaggctaaatggtatgtcgagatcgataatgctcagatcagatgagacctaaacattggaaataaaag 14790  T
Q  211 ttaaaagactatttatttcgatacatttcgtaggaaggaaagtaattgtttattaaactcaccctactaagtatccttcctgatggtgtagaatcataaa 310  Q
     || ||   ||||||||    |  ||||| ||| ||||||| |||||||||| |  |||||||||||| |||||||||||  |||||||||| |||||||    
T  14789 gtagaattatatttattctctttgatttcatagaaaggaaaataattgtttaatttactcaccctacttagtatccttcccaatggtgtagagtcataaa 14690  T
Q  311 aggacatgggtgcacgaaagagggagttcatcaactgtgaaaataaattcttcgatgattgaagacccaaagcaaccaaaagtagacttctgatcagtaa 410  Q
    | ||||||||||| || |||||||||||||||||||||||||||||||  || |||||||||||||| |||||||| | |||||||| |||| | | ||     
T  14689 atgacatgggtgctcggaagagggagttcatcaactgtgaaaataaataatttgatgattgaagacctaaagcaactacaagtagacctctggtgaatat 14590  T
Q  411 gaaaaatgttgaagaaacaccgataaggaaataaactaaaatcaa 455  Q
     |||| | ||||| || |||| |||  ||||||||||||||||||    
T  14589 aaaaactattgaaaaagcaccaatagtgaaataaactaaaatcaa 14545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 235 - 455
Target Start/End: Original strand, 6677 - 6897
Alignment:
Q  235 atttcgtaggaaggaaagtaattgtttattaaactcaccctactaagtatccttcctgatggtgtagaatcataaaaggacatgggtgcacgaaagaggg 334  Q
    ||||| ||| ||||||| |||||||  ||||  |||||||||||||||||||||||  ||||||| ||||||||||| ||||| |||||| |||||||||    
T  6677 atttcatagaaaggaaaataattgtgcattattctcaccctactaagtatccttcccaatggtgttgaatcataaaatgacataggtgcatgaaagaggg 6776  T
Q  335 agttcatcaactgtgaaaataaattcttcgatgattgaagacccaaagcaaccaaaagtagacttctgatcagtaagaaaaatgttgaagaaacaccgat 434  Q
    | |||||||  |||||||||||||  || ||||||| ||||||||||| ||| | |||||||| |||||| |  || |||| ||||||| || |||||||    
T  6777 aattcatcagttgtgaaaataaatcttttgatgatttaagacccaaagtaactataagtagacatctgatgaacaaaaaaactgttgaaaaaccaccgat 6876  T
Q  435 aaggaaataaactaaaatcaa 455  Q
    ||||| || ||||||||||||    
T  6877 aaggagatgaactaaaatcaa 6897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 206
Target Start/End: Original strand, 6478 - 6639
Alignment:
Q  45 acataaaccattggaatagcaagaaccaagacttgccaagtgacaactgccaaaactgttagactggaataaaatactagagttcctgccacagcaaaag 144  Q
    |||||||||||||| ||||| | ||  ||||||||||| ||||||||||| |||||||| ||||| ||||||||   || |||  || |||  | | ||     
T  6478 acataaaccattggtatagcgacaattaagacttgccatgtgacaactgctaaaactgtaagactagaataaaaatttatagtggctcccattgaataac 6577  T
Q  145 tgaggctgaatgggatgtcaatatccataatactcagatcagatgagacctaaacaatgaaa 206  Q
    ||||||| || || | ||||| ||||||||| || |||||||| |||||||| |||||||||    
T  6578 tgaggctaaagggcaggtcaagatccataatgcttagatcagacgagacctacacaatgaaa 6639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 24 - 385
Target Start/End: Original strand, 16391465 - 16391828
Alignment:
Q  24 attacctgcaagtaaattgcaacataaaccattggaatagcaagaaccaagacttgccaagtgacaactgccaaaactgttagactggaataaaatacta 123  Q
    ||||||||||||  ||| | || |||||||||||| ||||| | || ||| |||||||||||||||||||  |||||||| ||| | ||||||||    |    
T  16391465 attacctgcaagcgaatcgtaatataaaccattggtatagcgacaatcaatacttgccaagtgacaactgagaaaactgtaagagtagaataaaaattca 16391564  T
Q  124 gagttcctgccacagcaaaagtgaggctgaatgggatgtcaatatccataatactcagatcagatgagacctaaacaatgaaac--cggttaaaagacta 221  Q
     |||   | | || |||||||||||||| |||||||| |||| ||||||||| ||||| |||||||| |||||||||| ||||   |  ||| |  | ||    
T  16391565 tagtggttccgaccgcaaaagtgaggctaaatgggatatcaagatccataatgctcagttcagatgaaacctaaacaaggaaagaacaattacattatta 16391664  T
Q  222 tttatttcgata-catttcgtaggaaggaaagtaattgtttattaaactcaccctactaagtatccttcctgatggtgtagaatcataaaaggacatggg 320  Q
     || |||| ||  |||||| ||| || | |  | || ||||| ||  || |||||||| |||||||||||  |||||||| | |||||||| | ||| ||    
T  16391665 ctt-tttctattgcatttcatagaaaaggagatgatcgtttaatatgcttaccctacttagtatccttcccaatggtgtacagtcataaaaaggcatcgg 16391763  T
Q  321 tgcacgaaagagggagttcatcaactgtgaaaataaattcttcgatgattgaagacccaaagcaa 385  Q
    ||||||||| |||||||||||||||||| |||||||||  || || ||||||||||| |||||||    
T  16391764 tgcacgaaaaagggagttcatcaactgtaaaaataaatattttgaggattgaagacctaaagcaa 16391828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 271 - 455
Target Start/End: Complemental strand, 44813546 - 44813362
Alignment:
Q  271 accctactaagtatccttcctgatggtgtagaatcataaaaggacatgggtgcacgaaagagggagttcatcaactgtgaaaataaattcttcgatgatt 370  Q
    |||||||||||||||| |||  | || || ||||||||||| ||||| ||||||||||| |||||||| |  | |||| |||| |||  ||| || ||||    
T  44813546 accctactaagtatccgtcccaaaggcgtggaatcataaaacgacataggtgcacgaaaaagggagtttagtagctgtaaaaacaaagactttgaagatt 44813447  T
Q  371 gaagacccaaagcaaccaaaagtagacttctgatcagtaagaaaaatgttgaagaaacaccgataaggaaataaactaaaatcaa 455  Q
    ||||||||||||||||   ||  |||||||| |||| |||||| | |||||||| ||| || ||||  || ||||||| ||||||    
T  44813446 gaagacccaaagcaactgtaaaaagacttctcatcaataagaatattgttgaagtaactccaataaacaagtaaactagaatcaa 44813362  T

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