View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16690_low_3 (Length: 440)
Name: NF16690_low_3
Description: NF16690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16690_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 24 - 424
Target Start/End: Original strand, 11182160 - 11182559
Alignment:
| Q |
24 |
gtgagaatcctaatttttattttgtggatttttggaagcgagtacagaaaatgaaaatgcaagtatagaaaaatttaaatctaagacttgttgcacaagg |
123 |
Q |
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| T |
11182160 |
gtgagaaccctaatttttattttgtggatttttggaagcgagtacagaaaatgaaaatgcaagtatagaaaaatttaaatc-aagacttgttgcacaagg |
11182258 |
T |
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| Q |
124 |
cttcaatcatacagaaggattgaactactttgagagattcccacttaatgcaaagtaatccatagtgagagctgttcttttggccctagcttctctacat |
223 |
Q |
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| T |
11182259 |
gttcaatcatacagaaggattgaactactttgagagattcccacttaatgcaaagttatccatagtaagaactgttcttttggccctagcttctctacat |
11182358 |
T |
|
| Q |
224 |
ggttgccatttacatgaggcacgatatacatgaagatgcctcaatgggtctctactcctaaactaagtcaggtatgcaaacttcttaagtcattatatgg |
323 |
Q |
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| T |
11182359 |
ggttgccatttacatgaggcacgatatacatgaagaagcctcaatggg--tctactcctaaactaagtcaggtatgcaaacttcttaagtcattatatgg |
11182456 |
T |
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| Q |
324 |
tctttaagcaagcaagtcaccattggtttaaagaattgactaatttc--ctatttgctcatagatttgtgcaatcacattctgatcgcaccctaggatac |
421 |
Q |
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| T |
11182457 |
tctttaagcaagcaagtcgccattggtttaaagaattgactaatttcgtatatttgctcatggatttgtgcaatcacattctgatcgcaccctaggatac |
11182556 |
T |
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