View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16690_low_5 (Length: 426)
Name: NF16690_low_5
Description: NF16690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16690_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 18 - 416
Target Start/End: Original strand, 12232973 - 12233371
Alignment:
| Q |
18 |
caaaccttacaggaaaaaacaaccgcagatgagatataaaaatggaatcaagatgaagaattaattaataggaaaataggttttagtatatgcttacatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12232973 |
caaaccttacaggaaaaaacaaccgcagatgagatataaaaatggaatcaagatgaagaattcattaataggaaaataggttttagtatatgcttacatt |
12233072 |
T |
|
| Q |
118 |
acttcggaccatggaaggaagttgacactcatcaccgacaagaattgcatgacttattctaggcagaagtaaaggcacaattgattcacattctttaagt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12233073 |
acttcggaccatggaaggaagttgacactcatcaccgacaagaattgcatgacttattctaggcagaagtaaaggcacaattgattcacattctttaagt |
12233172 |
T |
|
| Q |
218 |
tgtgcagcttcatcgatcaccagaaggttgattggcttcattgaaatggtgtgcagcctaaaggaactagaagctgtgcaaaatattattgatgaatttt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12233173 |
tgtgcagcttcatcgatcaccagaaggttgattggcttcattgaaatggtgtgcagcctaaaggaactagaagctgtgcaaaatattattgatgaatttt |
12233272 |
T |
|
| Q |
318 |
taaaacaaaagtcactaactgattcgtcgtctgtaaatcttttcaactcaagtctgtcaagcgaatctttcacagtttctaaagctgataaacattcat |
416 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12233273 |
taaaacaaaagtcactaactgattcatcgtctgtaaatcttttcaactcaagtctgtcaagcgaatctttcacagtttctaaagctgataaacattcat |
12233371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University