View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16690_low_7 (Length: 349)
Name: NF16690_low_7
Description: NF16690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16690_low_7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 7 - 349
Target Start/End: Original strand, 36550520 - 36550864
Alignment:
| Q |
7 |
acaccaaccccggcaagtgatcaactgacgatgatttcgattcctctggtgatggatgcctcaattccaaccctcgactctttcttttgctcattgtgtg |
106 |
Q |
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| T |
36550520 |
acaccaaccccggcaagtgatcaactgacgatgatttcgattcctctggtgatggatgcctcaattccaaccctcgactctttcttttgctcattgtgtg |
36550619 |
T |
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| Q |
107 |
tagatgtcaagttaacccttaattttcaagcaaaataattgttactctaaaaatgtagatctaattgtaagaagaagaaaagacaagatgaatacaatgg |
206 |
Q |
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| T |
36550620 |
tagatgtcaagttaacccttaattttcaagcaaaataattgttactctaaaaatgtagatctaattataagaagaagaaaagacaagatgaatacaatgg |
36550719 |
T |
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| Q |
207 |
cactcgtgtagtttggttggttatatatccctcatccaatgaatcaatgac--atcatattttctttcgaattcattattttaaaataaattcaaatatt |
304 |
Q |
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| T |
36550720 |
cactcgtgtagtttggttggttatatatccctcatccaatgaatcaatgacatatcatattttctttcgaattcattattttaaaataaattcaaatgtt |
36550819 |
T |
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| Q |
305 |
aaacaacaatactnnnnnnncaatatttagtgagggaaaacatga |
349 |
Q |
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| T |
36550820 |
aaacgacactactaaaaaaacaatatttagtgagggaaaacatga |
36550864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 310
Target Start/End: Original strand, 51205683 - 51205713
Alignment:
| Q |
280 |
ttattttaaaataaattcaaatattaaacaa |
310 |
Q |
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| T |
51205683 |
ttattttaaaataaattcaaatattaaacaa |
51205713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 310
Target Start/End: Complemental strand, 54542002 - 54541972
Alignment:
| Q |
280 |
ttattttaaaataaattcaaatattaaacaa |
310 |
Q |
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| T |
54542002 |
ttattttaaaataaattcaaatattaaacaa |
54541972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 310
Target Start/End: Original strand, 32278107 - 32278137
Alignment:
| Q |
280 |
ttattttaaaataaattcaaatattaaacaa |
310 |
Q |
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| T |
32278107 |
ttattttaaaataaattcaaatattaaacaa |
32278137 |
T |
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