View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16691_high_1 (Length: 352)
Name: NF16691_high_1
Description: NF16691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16691_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 7 - 334
Target Start/End: Original strand, 23451502 - 23451829
Alignment:
| Q |
7 |
tccaagaatattaattttttgttaagaataagtgttcagtattggctaactctggttcatagattccttcaaatatattgtgcaagacacattttcaaat |
106 |
Q |
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| T |
23451502 |
tccaataatattaattttttgttaagaataagtgttcagtcttggctaactctggttcatagattccttcaaatatattgtgcaagacacattttcaaat |
23451601 |
T |
|
| Q |
107 |
cataattttcattaattccagcattataatacactagggggatcgagtagatcccattagttcataacagctttgaaaaggtaaaatttaaagaatttaa |
206 |
Q |
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| T |
23451602 |
cataattttcattaattccagcattataatacacaagggggatcgagtagatcccattagttcataacagctttgaaaaggtaaaatttaaagaatttaa |
23451701 |
T |
|
| Q |
207 |
aagtctaatggtgcttaaactaacaatccagtaaacaagaactccaaaacaaccacgacatagtttcaagtttaagaacttgtaaacttggccaattcac |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23451702 |
aagtctaatggtgcttaaactaacaatccagtaaacaagaactccaaaacagcgacgacatagtttcaagtttaagaacttgtaaacttggccaattcac |
23451801 |
T |
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| Q |
307 |
cgggcagaacaagcctgaccgcggtctg |
334 |
Q |
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| T |
23451802 |
cgggcagaacaagcctgactgcggtctg |
23451829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 26434246 - 26434205
Alignment:
| Q |
293 |
cttggccaattcaccgggcagaacaagcctgaccgcggtctg |
334 |
Q |
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| T |
26434246 |
cttggccaattcaccgggcagaacaagcctgaccgcggtctg |
26434205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 26436026 - 26435985
Alignment:
| Q |
293 |
cttggccaattcaccgggcagaacaagcctgaccgcggtctg |
334 |
Q |
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| T |
26436026 |
cttggccaattcaccgggcagaacaagcctgaccgcggtctg |
26435985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 26832957 - 26832916
Alignment:
| Q |
293 |
cttggccaattcaccgggcagaacaagcctgaccgcggtctg |
334 |
Q |
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| T |
26832957 |
cttggccaattcaccgggcagaacaagcctgaccgcggtctg |
26832916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 14715614 - 14715554
Alignment:
| Q |
203 |
ttaaaagtctaatggtgcttaaac-taacaatccagtaaacaagaactccaaaacaaccac |
262 |
Q |
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|||||| ||||||||||||| ||| |||| |||||| || |||||||| |||||||||||| |
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| T |
14715614 |
ttaaaaatctaatggtgcttcaacataacgatccagcaagcaagaacttcaaaacaaccac |
14715554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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