View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16691_low_1 (Length: 416)
Name: NF16691_low_1
Description: NF16691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16691_low_1 |
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| [»] scaffold0428 (1 HSPs) |
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| [»] scaffold0184 (1 HSPs) |
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| [»] scaffold0078 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 7 - 397
Target Start/End: Complemental strand, 905996 - 905606
Alignment:
| Q |
7 |
tccaagaatataagcagagctaacaactttacttggaactctaacaacccacaagaatttcttactactcaattctagtccaaatgctaactcattcagt |
106 |
Q |
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||||| || |||||||||| ||||| ||||||||||||||||||||||||||||||| || |||| ||||||||||| |||||||||||||||||||||| |
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| T |
905996 |
tccaacaaaataagcagagttaacatctttacttggaactctaacaacccacaagaactttttaccactcaattctaatccaaatgctaactcattcagt |
905897 |
T |
|
| Q |
107 |
tgttcatgagaaactgttccaccactcccaaaacatacataaagaacagaatttggaggttgattctccaaccaccttaaacacattgaattaatgttat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
905896 |
tgttcatgagaaactgttccaccactcccaaaacatacataaagaacagaatttggaggttgattctccaaccaccttaaacacattgaattaatgttat |
905797 |
T |
|
| Q |
207 |
cttcacaattagactcatttctaataatgggtcccactggataaacacaaggtttctctttttcttgaagaacccttataacatctggctccaaatcagt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
905796 |
cttcacaattagactcatttctaataatgggtcccactggataaacacaaggtttctctttttcttgaagaacccttataacatctggctccaaatcagt |
905697 |
T |
|
| Q |
307 |
gaaagtgctgattataaaaccatcaactaatgtgagtttttgacaaacttcaagaaatattttgtaatttacatttgatctttcacataga |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
905696 |
gaaagtgctgattataaaaccatcaactaatgtgagtttttgacaaacttcaagaaatattttgtaatttacatttgatctttcacataga |
905606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 7 - 397
Target Start/End: Original strand, 894647 - 895037
Alignment:
| Q |
7 |
tccaagaatataagcagagctaacaactttacttggaactctaacaacccacaagaatttcttactactcaattctagtccaaatgctaactcattcagt |
106 |
Q |
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||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
894647 |
tccaacaaaataagcagagctaacaactttacttggaactctaacaacccacaagaatttcttaccactcaattctagtccaaatgctaactcattgagt |
894746 |
T |
|
| Q |
107 |
tgttcatgagaaactgttccaccactcccaaaacatacataaagaacagaatttggaggttgattctccaaccaccttaaacacattgaattaatgttat |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
894747 |
tgttcatgagaaactgttccaccactcccaaaacatacataaagaacagaacttggtggttgattctccaaccaccttaaacacattgaattaatgttat |
894846 |
T |
|
| Q |
207 |
cttcacaattagactcatttctaataatgggtcccactggataaacacaaggtttctctttttcttgaagaacccttataacatctggctccaaatcagt |
306 |
Q |
| |
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|||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||| |||||| || || || ||||||||| | |
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| T |
894847 |
cttcacaattagactcatttctgtggaggggtcccactggataaaaacaaggtttctctttttcttgaagaagccttatgacctcaggttccaaatcatt |
894946 |
T |
|
| Q |
307 |
gaaagtgctgattataaaaccatcaactaatgtgagtttttgacaaacttcaagaaatattttgtaatttacatttgatctttcacataga |
397 |
Q |
| |
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||||||| | || |||| |||||||||||||| || ||||||||| || ||||||||| |||||| | || | ||||||||||||||||| |
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| T |
894947 |
gaaagtgtttatgataacaccatcaactaatgagaatttttgacacacatcaagaaatgatttgtactctaaacttgatctttcacataga |
895037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 162
Target Start/End: Original strand, 563983 - 564075
Alignment:
| Q |
70 |
actactcaattctagtccaaatgctaactcattcagttgttcatgagaaactgttccaccactcccaaaacatacataaagaacagaatttgg |
162 |
Q |
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|||||||||||||| || |||||||||||||||| ||| | ||||||| |||||||||||| ||||| | ||| ||| ||||||||||| |
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| T |
563983 |
actactcaattctaaccctaatgctaactcattcatttggttttgagaaattgttccaccactaccaaatgaaacaaaaaccacagaatttgg |
564075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 7e-56; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 34 - 362
Target Start/End: Original strand, 8294626 - 8294951
Alignment:
| Q |
34 |
tttacttggaactctaacaacccacaagaatttcttactactcaattctagtccaaatgctaactcattcagttgttcatgagaaactgttccaccactc |
133 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||| | || |||||||||||| ||||| |||||||| || ||||| || ||||| | |||||||||||| |
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| T |
8294626 |
tttacttggagctctcacaacccacaagaatttgtgaccactcaattctagaccaaaagctaactcgttgagttgatcttgagagagtgttccaccactt |
8294725 |
T |
|
| Q |
134 |
ccaaaacatacataaagaacagaatttggaggttgattctccaaccaccttaaacacattgaattaatgttatcttcacaattagactcatttctaataa |
233 |
Q |
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|||||| | ||| ||||||||||| |||| ||||||| ||||||||||||||||||||||| ||||| ||||| ||| |||||||| ||||| | |
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| T |
8294726 |
ccaaaagagacaaaaagaacagaacttggttgttgattttccaaccaccttaaacacattga---catgtttgcttcattatttgactcattcctaatca |
8294822 |
T |
|
| Q |
234 |
tgggtcccactggataaacacaaggtttctctttttcttgaagaacccttataacatctggctccaaatcagtgaaagtgctgattataaaaccatcaac |
333 |
Q |
| |
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| ||||| || |||||||||| |||||||||| | ||||||||||||||||| || || || ||||||||||||||||| | || |||| |||||||| |
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| T |
8294823 |
taggtccaaccggataaacactaggtttctctctatcttgaagaacccttatgacttccggttccaaatcagtgaaagtattcataataacaccatcaaa |
8294922 |
T |
|
| Q |
334 |
taatgtgagtttttgacaaacttcaagaa |
362 |
Q |
| |
|
|||| | ||||||||| || ||||||| |
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| T |
8294923 |
caatgataatttttgacacacatcaagaa |
8294951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 34 - 284
Target Start/End: Complemental strand, 33257129 - 33256882
Alignment:
| Q |
34 |
tttacttggaactctaacaacccacaagaatttcttactactcaattctagtccaaatgctaactcattcagttgttcatgagaaactgttccaccactc |
133 |
Q |
| |
|
|||||||||| |||| |||||||||||||| || | || |||||||||||| ||||| ||||||||||| ||||| || ||||| | |||||||||||| |
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| T |
33257129 |
tttacttggagctctcacaacccacaagaacttgtgaccactcaattctagaccaaaagctaactcattgagttgatcttgagagagtgttccaccactt |
33257030 |
T |
|
| Q |
134 |
ccaaaacatacataaagaacagaatttggaggttgattctccaaccaccttaaacacattgaattaatgttatcttcacaattagactcatttctaataa |
233 |
Q |
| |
|
||||| | ||| ||| ||||||| |||| || ||||| ||||||||||||||||||| ||| ||||| ||||| ||| |||||||||||||| | |
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|
| T |
33257029 |
ccaaaggagacaaaaataacagaacttggtggctgattttccaaccaccttaaacacactga---catgtttgcttcattatttgactcatttctaatga |
33256933 |
T |
|
| Q |
234 |
tgggtcccactggataaacacaaggtttctctttttcttgaagaaccctta |
284 |
Q |
| |
|
| ||||| || ||| |||||| |||||||||| | |||||||| ||||||| |
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|
| T |
33256932 |
taggtccaaccggaaaaacactaggtttctctctgtcttgaagtaccctta |
33256882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 34 - 284
Target Start/End: Complemental strand, 1247 - 1000
Alignment:
| Q |
34 |
tttacttggaactctaacaacccacaagaatttcttactactcaattctagtccaaatgctaactcattcagttgttcatgagaaactgttccaccactc |
133 |
Q |
| |
|
|||||||||| |||| |||||||||||||| || | || |||||||||||| ||||| ||||||||||| ||||| || ||||| | |||||||||||| |
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| T |
1247 |
tttacttggagctctcacaacccacaagaacttgtgaccactcaattctagaccaaaagctaactcattgagttgatcttgagagagtgttccaccactt |
1148 |
T |
|
| Q |
134 |
ccaaaacatacataaagaacagaatttggaggttgattctccaaccaccttaaacacattgaattaatgttatcttcacaattagactcatttctaataa |
233 |
Q |
| |
|
||||| | ||| ||| ||||||| |||| || ||||| ||||||||||||||||||| ||| ||||| ||||| ||| |||||||||||||| | |
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|
| T |
1147 |
ccaaaggagacaaaaataacagaacttggtggctgattttccaaccaccttaaacacactga---catgtttgcttcattatttgactcatttctaatga |
1051 |
T |
|
| Q |
234 |
tgggtcccactggataaacacaaggtttctctttttcttgaagaaccctta |
284 |
Q |
| |
|
| ||||| || ||| |||||| |||||||||| | |||||||| ||||||| |
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|
| T |
1050 |
taggtccaaccggaaaaacactaggtttctctctgtcttgaagtaccctta |
1000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 139
Target Start/End: Complemental strand, 16490752 - 16490675
Alignment:
| Q |
62 |
aatttcttactactcaattctagtccaaatgctaactcattcagttgttcatgagaaactgttccaccactcccaaaa |
139 |
Q |
| |
|
||||| |||| ||||||||||| ||| | ||||||||||||| ||| || || |||| |||||||||||| |||||| |
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|
| T |
16490752 |
aattttttaccactcaattctaacccataagctaactcattcacttgctcttgtgaaagtgttccaccacttccaaaa |
16490675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 138
Target Start/End: Original strand, 11881 - 11933
Alignment:
| Q |
86 |
ccaaatgctaactcattcagttgttcatgagaaactgttccaccactcccaaa |
138 |
Q |
| |
|
||||| ||||||||||| | |||||| ||||||| |||||||||||| ||||| |
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|
| T |
11881 |
ccaaaagctaactcattaacttgttcttgagaaagtgttccaccacttccaaa |
11933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 60963 - 60911
Alignment:
| Q |
86 |
ccaaatgctaactcattcagttgttcatgagaaactgttccaccactcccaaa |
138 |
Q |
| |
|
||||| ||||||||||| | |||||| ||||||| |||||||||||| ||||| |
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|
| T |
60963 |
ccaaaagctaactcattaacttgttcttgagaaagtgttccaccacttccaaa |
60911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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