View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16691_low_3 (Length: 335)

Name: NF16691_low_3
Description: NF16691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16691_low_3
NF16691_low_3
[»] chr4 (5 HSPs)
chr4 (1-196)||(19141959-19142154)
chr4 (1-194)||(41499977-41500170)
chr4 (1-173)||(43405526-43405698)
chr4 (221-274)||(19142179-19142232)
chr4 (221-274)||(41499897-41499950)
[»] chr3 (5 HSPs)
chr3 (1-196)||(675564-675759)
chr3 (221-274)||(675486-675539)
chr3 (221-274)||(35765026-35765079)
chr3 (221-274)||(46764191-46764244)
chr3 (43-107)||(32797809-32797873)
[»] chr1 (12 HSPs)
chr1 (1-195)||(22581682-22581876)
chr1 (1-196)||(4816184-4816379)
chr1 (1-196)||(34059753-34059948)
chr1 (50-193)||(33052511-33052654)
chr1 (78-195)||(12371487-12371605)
chr1 (221-274)||(4816404-4816457)
chr1 (221-274)||(34059973-34060026)
chr1 (221-274)||(22581902-22581955)
chr1 (222-274)||(39443418-39443470)
chr1 (222-274)||(39464741-39464793)
chr1 (1-58)||(10069234-10069291)
chr1 (222-274)||(39465880-39465932)
[»] chr5 (5 HSPs)
chr5 (1-196)||(29638799-29638994)
chr5 (45-195)||(38475918-38476070)
chr5 (221-276)||(29639019-29639074)
chr5 (2-109)||(10353922-10354029)
chr5 (73-109)||(1436904-1436940)
[»] scaffold0010 (1 HSPs)
scaffold0010 (1-196)||(250261-250456)
[»] chr7 (3 HSPs)
chr7 (14-196)||(39051232-39051412)
chr7 (14-102)||(31200674-31200762)
chr7 (223-251)||(39051144-39051172)
[»] scaffold0049 (1 HSPs)
scaffold0049 (50-196)||(46565-46711)
[»] chr8 (3 HSPs)
chr8 (14-109)||(3694144-3694239)
chr8 (142-194)||(3694079-3694131)
chr8 (154-194)||(19926940-19926980)
[»] chr2 (1 HSPs)
chr2 (2-102)||(40142211-40142311)


Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 19141959 - 19142154
Alignment:
Q  1 gattgcgtaatcgaatgggagatgattggatgaatgattgtttcgtgacttatattgagagagatgtggcggacaaaattgatgatgagttgattattca 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19141959 gattgcgtaatcgaatgggagatgattggatgaatgattgtctcgtgacttatattgagagagatgtggcggacaaaattgatgatgagttgattattca 19142058  T
Q  101 acgatttcagaagatggcaccgcgtaggggacatttgtaaagaatggatgaagttttttgagtacattgtaaattgaatacaatgtaattttttgg 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19142059 acgatttcagaagatggcaccgcgtaggggacatttgtaaagaatggatgaagttttttgagtacattgtaaattgaatacaatgtaattttttgg 19142154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 41500170 - 41499977
Alignment:
Q  1 gattgcgtaatcgaatgggagatgattggatgaatgattgtttcgtgacttatattgagagagatgtggcggacaaaattgatgatgagttgattattca 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41500170 gattgcgtaatcgaatgggagatgattggatgaatgattgtctcgtgacttatattgagagagatgtggcggacaaaattgatgatgagttgattattca 41500071  T
Q  101 acgatttcagaagatggcaccgcgtaggggacatttgtaaagaatggatgaagttttttgagtacattgtaaattgaatacaatgtaatttttt 194  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41500070 acgatttcagaagatggcaccgcgtaagggacatttgtaaagaatggatgaagttttttgagtacattgtaaattgaatacaatgtaatttttt 41499977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 43405526 - 43405698
Alignment:
Q  1 gattgcgtaatcgaatgggagatgattggatgaatgattgtttcgtgacttatattgagagagatgtggcggacaaaattgatgatgagttgattattca 100  Q
    |||||||||||  ||||||||||||||| ||||||||||||  ||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  43405526 gattgcgtaataaaatgggagatgattgcatgaatgattgtcccgtaacttatattgagagagatatggccgacaaaattgatgatgagttgattattca 43405625  T
Q  101 acgatttcagaagatggcaccgcgtaggggacatttgtaaagaatggatgaagttttttgagtacattgtaaa 173  Q
    |||||||||||| ||| |||| ||| ||||||||||| ||||||| |||| |||||||| |||||||||||||    
T  43405626 acgatttcagaacatgacaccccgtcggggacatttgcaaagaatagatggagtttttttagtacattgtaaa 43405698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 221 - 274
Target Start/End: Original strand, 19142179 - 19142232
Alignment:
Q  221 aattaaagtttaaaattttgaacctcctgactctaggtcctggcaacgccactg 274  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  19142179 aattaaagtttaaaattttgaacctcctgaccctgggtcctggcaacgccactg 19142232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 221 - 274
Target Start/End: Complemental strand, 41499950 - 41499897
Alignment:
Q  221 aattaaagtttaaaattttgaacctcctgactctaggtcctggcaacgccactg 274  Q
    ||||||||||||||||||||||||||||||| || ||||| |||||||||||||    
T  41499950 aattaaagtttaaaattttgaacctcctgaccctgggtcccggcaacgccactg 41499897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 675759 - 675564
Alignment:
Q  1 gattgcgtaatcgaatgggagatgattggatgaatgattgtttcgtgacttatattgagagagatgtggcggacaaaattgatgatgagttgattattca 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  675759 gattgcgtaatcgaatgggagatgattggatgaatgattgtctcgtgacttatattgagagagatgtggcggacaaaattgatgatgagttgattattca 675660  T
Q  101 acgatttcagaagatggcaccgcgtaggggacatttgtaaagaatggatgaagttttttgagtacattgtaaattgaatacaatgtaattttttgg 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  675659 acgatttcagaagatggcaccgcgtaggggacatttgtaaagaatggatgaagttttttgagtacattgtaaattgaatacaatgtaatattttgg 675564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 221 - 274
Target Start/End: Complemental strand, 675539 - 675486
Alignment:
Q  221 aattaaagtttaaaattttgaacctcctgactctaggtcctggcaacgccactg 274  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  675539 aattaaagtttaaaattttgaacctcctgaccctgggtcctggcaacgccactg 675486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 274
Target Start/End: Original strand, 35765026 - 35765079
Alignment:
Q  221 aattaaagtttaaaattttgaacctcctgactctaggtcctggcaacgccactg 274  Q
    |||||||||| |||| ||||||||  |||||||  |||||||||||||||||||    
T  35765026 aattaaagttcaaaagtttgaacccgctgactcggggtcctggcaacgccactg 35765079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 274
Target Start/End: Original strand, 46764191 - 46764244
Alignment:
Q  221 aattaaagtttaaaattttgaacctcctgactctaggtcctggcaacgccactg 274  Q
    |||||||||| |||| ||||||||  |||||||  |||||||||||||||||||    
T  46764191 aattaaagttcaaaagtttgaacccgctgactcggggtcctggcaacgccactg 46764244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 32797873 - 32797809
Alignment:
Q  43 tcgtgacttatattgagagagatgtggcggacaaaattgatgatgagttgattattcaacgattt 107  Q
    |||||| |||||||||||||||||||   |||||| ||||| |||| ||||||||| ||| ||||    
T  32797873 tcgtgaattatattgagagagatgtgttcgacaaagttgataatgaattgattatttaacaattt 32797809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 22581682 - 22581876
Alignment:
Q  1 gattgcgtaatcgaatgggagatgattggatgaatgattgtttcgtgacttatattgagagagatgtggcggacaaaattgatgatgagttgattattca 100  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22581682 gattgcgtaatcgaatgggagatgatgggatgaatgattgtctcgtgacttatattgagagagatgtggcggacaaaattgatgatgagttgattattca 22581781  T
Q  101 acgatttcagaagatggcaccgcgtaggggacatttgtaaagaatggatgaagttttttgagtacattgtaaattgaatacaatgtaattttttg 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22581782 acgatttcagaagatggcaccgcgtaggggacatttgtaaagaatggatgaagttttttgagtacattgtaaattgaatacaatgtaattttttg 22581876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 4816184 - 4816379
Alignment:
Q  1 gattgcgtaatcgaatgggagatgattggatgaatgattgtttcgtgacttatattgagagagatgtggcggacaaaattgatgatgagttgattattca 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4816184 gattgcgtaatcgaatgggagatgattggatgaatgattgtctcgtgacttatattgagagagatgtggcggacaaaattgatgatgagttgattattca 4816283  T
Q  101 acgatttcagaagatggcaccgcgtaggggacatttgtaaagaatggatgaagttttttgagtacattgtaaattgaatacaatgtaattttttgg 196  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4816284 acgatttcagaagatagcaccgcgtaggggacatttgtaaacaatggatgaagttttttgagtacattgtaaattgaatacaatgtaattttttgg 4816379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 34059753 - 34059948
Alignment:
Q  1 gattgcgtaatcgaatgggagatgattggatgaatgattgtttcgtgacttatattgagagagatgtggcggacaaaattgatgatgagttgattattca 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34059753 gattgcgtaatcgaatgggagatgattggatgaatgattgtctcgtaacttatattgagagagatgtggcggacaaaattgatgatgagttgattattca 34059852  T
Q  101 acgatttcagaagatggcaccgcgtaggggacatttgtaaagaatggatgaagttttttgagtacattgtaaattgaatacaatgtaattttttgg 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  34059853 acgatttcagaagatggcaccgcgtaggggacatttgtaaagaatggatgaagttttttgaatacattgtaaaatgaatacaatgtaattttttgg 34059948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 50 - 193
Target Start/End: Complemental strand, 33052654 - 33052511
Alignment:
Q  50 ttatattgagagagatgtggcggacaaaattgatgatgagttgattattcaacgatttcagaagatggcaccgcgtaggggacatttgtaaagaatggat 149  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||| |||  |||||||||| ||||||||||||||||||||    
T  33052654 ttatattgagagagatgtggtggacaagattgatgatgagttgattattcaactatttcagaacatgcaaccgcgtaggagacatttgtaaagaatggat 33052555  T
Q  150 gaagttttttgagtacattgtaaattgaatacaatgtaattttt 193  Q
    |||||||||| ||||||||| |||||||||||||||||||||||    
T  33052554 gaagtttttttagtacattgcaaattgaatacaatgtaattttt 33052511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 195
Target Start/End: Complemental strand, 12371605 - 12371487
Alignment:
Q  78 attgatgatgagttgattattcaacgatttcagaagatggcaccgcgtaggggacatttgtaaagaatggatg-aagttttttgagtacattgtaaattg 176  Q
    ||||||||||||||||||||||||| |||| |||| ||   ||| |||||| |||||| ||| || |||  || || |||||| |||||| |||||||||    
T  12371605 attgatgatgagttgattattcaacaattttagaacattaaaccccgtaggagacattcgtagagtatgtttggaatttttttaagtacaatgtaaattg 12371506  T
Q  177 aatacaatgtaattttttg 195  Q
    |||||||||||||| ||||    
T  12371505 aatacaatgtaattctttg 12371487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 221 - 274
Target Start/End: Original strand, 4816404 - 4816457
Alignment:
Q  221 aattaaagtttaaaattttgaacctcctgactctaggtcctggcaacgccactg 274  Q
    ||||||||||||||||||||||||||||||| || |||||| ||||||||||||    
T  4816404 aattaaagtttaaaattttgaacctcctgaccctgggtcctagcaacgccactg 4816457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 221 - 274
Target Start/End: Original strand, 34059973 - 34060026
Alignment:
Q  221 aattaaagtttaaaattttgaacctcctgactctaggtcctggcaacgccactg 274  Q
    |||||||||||||||||||||||||||| || || |||||||||||||||||||    
T  34059973 aattaaagtttaaaattttgaacctcctcaccctgggtcctggcaacgccactg 34060026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 274
Target Start/End: Original strand, 22581902 - 22581955
Alignment:
Q  221 aattaaagtttaaaattttgaacctcctgactctaggtcctggcaacgccactg 274  Q
    ||||||||||||||||||||||||||||||| || |||||||| || |||||||    
T  22581902 aattaaagtttaaaattttgaacctcctgaccctgggtcctggtaaagccactg 22581955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 222 - 274
Target Start/End: Complemental strand, 39443470 - 39443418
Alignment:
Q  222 attaaagtttaaaattttgaacctcctgactctaggtcctggcaacgccactg 274  Q
    |||||||||||||| |||||||||||| |||| |||| |||||||||||||||    
T  39443470 attaaagtttaaaagtttgaacctcctaactcaaggttctggcaacgccactg 39443418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 222 - 274
Target Start/End: Complemental strand, 39464793 - 39464741
Alignment:
Q  222 attaaagtttaaaattttgaacctcctgactctaggtcctggcaacgccactg 274  Q
    |||||||||||||| |||||||||||| |||| |||| |||||||||||||||    
T  39464793 attaaagtttaaaagtttgaacctcctaactcaaggttctggcaacgccactg 39464741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 10069234 - 10069291
Alignment:
Q  1 gattgcgtaatcgaatgggagatgattggatgaatgattgtttcgtgacttatattga 58  Q
    |||| |||||| ||||||  ||||| ||||||||||||||| | ||||||||||||||    
T  10069234 gattacgtaattgaatggaggatgaatggatgaatgattgtctagtgacttatattga 10069291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 274
Target Start/End: Complemental strand, 39465932 - 39465880
Alignment:
Q  222 attaaagtttaaaattttgaacctcctgactctaggtcctggcaacgccactg 274  Q
    |||||| ||||||| ||||||||||||||||| |||| ||| ||||| |||||    
T  39465932 attaaattttaaaagtttgaacctcctgactcaaggttctgacaacgacactg 39465880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 29638799 - 29638994
Alignment:
Q  1 gattgcgtaatcgaatgggagatgattggatgaatgattgtttcgtgacttatattgagagagatgtggcggacaaaattgatgatgagttgattattca 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29638799 gattgcgtaatcgaatgggagatgattggatgaatgattgtctcgtcacttatattgagagagatgtggcggacaaaattgatgatgagttgattattca 29638898  T
Q  101 acgatttcagaagatggcaccgcgtaggggacatttgtaaagaatggatgaagttttttgagtacattgtaaattgaatacaatgtaattttttgg 196  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  29638899 acgatttcagaagatggctacgcgtaggggacatttgtaaagaatggatgaagttttttgaatacattgtaaactgaatacaatgtaattttttgg 29638994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 195
Target Start/End: Original strand, 38475918 - 38476070
Alignment:
Q  45 gtgacttatattgagagagatgtggcggacaaaattgatgatgagttgattattcaacgatttcagaagatggcaccgcgtaggggacatttgtaaagaa 144  Q
    |||||||| |||||||||||||||    | ||  ||||| ||||||||||||||||||||||||| || || ||||| |||||||  || ||||| || |    
T  38475918 gtgacttacattgagagagatgtgttcaaaaaggttgataatgagttgattattcaacgatttcataacatagcacctcgtagggagcaattgtagagta 38476017  T
Q  145 tg--gatgaagttttttgagtacattgtaaattgaatacaatgtaattttttg 195  Q
    ||   ||||||| ||||||||||| |||| |||| || |||||||||||||||    
T  38476018 tgcatatgaagtattttgagtacaatgtacattgtatgcaatgtaattttttg 38476070  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 221 - 276
Target Start/End: Original strand, 29639019 - 29639074
Alignment:
Q  221 aattaaagtttaaaattttgaacctcctgactctaggtcctggcaacgccactgct 276  Q
    ||||||||||||||||||||||||||||||| || | |||||||||||||||||||    
T  29639019 aattaaagtttaaaattttgaacctcctgaccctggatcctggcaacgccactgct 29639074  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 109
Target Start/End: Original strand, 10353922 - 10354029
Alignment:
Q  2 attgcgtaatcgaatgggagatgattggatgaatgattgtttcgtgacttatattgagagagatgtggcggacaaaattgatgatgagttgattattcaa 101  Q
    |||| |||||||||| | |||||| ||||||||||||||| | ||| |||||||||||| |||||||    |||| |||||| ||||| |||| ||||||    
T  10353922 attgtgtaatcgaatagcagatgaatggatgaatgattgtctagtggcttatattgagaaagatgtgttcaacaacattgataatgaggtgatcattcaa 10354021  T
Q  102 cgatttca 109  Q
    | ||||||    
T  10354022 caatttca 10354029  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 1436940 - 1436904
Alignment:
Q  73 acaaaattgatgatgagttgattattcaacgatttca 109  Q
    |||| |||||| |||||||||||||||||||||||||    
T  1436940 acaacattgataatgagttgattattcaacgatttca 1436904  T

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Target: scaffold0010 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 250456 - 250261
Alignment:
Q  1 gattgcgtaatcgaatgggagatgattggatgaatgattgtttcgtgacttatattgagagagatgtggcggacaaaattgatgatgagttgattattca 100  Q
    ||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  250456 gattgtgtaatcaaatgggagatgattggatgaatgattgtctcgtgacttatattgagagagatgtggcggacaaaattgatgatgagttgattattca 250357  T
Q  101 acgatttcagaagatggcaccgcgtaggggacatttgtaaagaatggatgaagttttttgagtacattgtaaattgaatacaatgtaattttttgg 196  Q
    ||||||||| || ||   ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  250356 acgatttcataacataaaaccgcgtaggggacattcgtaaagaatggatgatgttttttgagtacattgtaaattgaatacaatgtaatattttgg 250261  T

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Target: chr7 (Bit Score: 116; Significance: 6e-59; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 14 - 196
Target Start/End: Complemental strand, 39051412 - 39051232
Alignment:
Q  14 aatgggagatgattggatgaatgattgtttcgtgacttatattgagagagatgtggcggacaaaattgatgatgagttgattattcaacgatttcagaag 113  Q
    |||||||||||| ||||||||||||| | | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||     
T  39051412 aatgggagatgaatggatgaatgattatcttgtgacttatattgagagagatgtggcggacaagattgatgatgagttgattattcaacgatttcataac 39051313  T
Q  114 atggcaccgcgtaggggacatttgtaaagaatggatgaagttttttgagtacattgtaaattgaatacaatgtaattttttgg 196  Q
    |||  |||||||||||  ||||||||||||||| ||| ||||||||||||| ||| |||||||||||||||||| ||||||||    
T  39051312 atgcaaccgcgtaggg--catttgtaaagaatgaatggagttttttgagtatattttaaattgaatacaatgtatttttttgg 39051232  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 31200674 - 31200762
Alignment:
Q  14 aatgggagatgattggatgaatgattgtttcgtgacttatattgagagagatgtggcggacaaaattgatgatgagttgattattcaac 102  Q
    ||||| |||| | ||||||||| ||||| | |||||||||||| | |||||| ||   ||||| |||||| ||||||||||||||||||    
T  31200674 aatggaagataaatggatgaattattgtcttgtgacttatattaaaagagatatgttcgacaacattgataatgagttgattattcaac 31200762  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 251
Target Start/End: Complemental strand, 39051172 - 39051144
Alignment:
Q  223 ttaaagtttaaaattttgaacctcctgac 251  Q
    |||||||||||||||||||||||||||||    
T  39051172 ttaaagtttaaaattttgaacctcctgac 39051144  T

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Target: scaffold0049 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 50 - 196
Target Start/End: Original strand, 46565 - 46711
Alignment:
Q  50 ttatattgagagagatgtggcggacaaaattgatgatgagttgattattcaacgatttcagaagatggcaccgcgtaggggacatttgtaaagaatggat 149  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||| |||  || ||||||||||||||||||||||||||||    
T  46565 ttatattgagagagaagtggcggacaagattgatgatgagttgattattcaatgatttcagaacatgcaactgcgtaggggacatttgtaaagaatggat 46664  T
Q  150 gaagttttttgagtacattgtaaattgaatacaatgtaattttttgg 196  Q
    | |||||||||||||||||||||||||||||||||||||||||||||    
T  46665 ggagttttttgagtacattgtaaattgaatacaatgtaattttttgg 46711  T

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Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 3694239 - 3694144
Alignment:
Q  14 aatgggagatgattggatgaatgattgtttcgtgacttatattgagagagatgtggcggacaaaattgatgatgagttgattattcaacgatttca 109  Q
    |||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||    
T  3694239 aatgggagatgaatggatgaatgattgtcttgtgacttatattgagagagatgtggcggacaagattgacgatgaattgattattcaacgatttca 3694144  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 3694131 - 3694079
Alignment:
Q  142 gaatggatgaagttttttgagtacattgtaaattgaatacaatgtaatttttt 194  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||| ||||||    
T  3694131 gaatgaatggagttttttgagtacattgtaaattgaatacaatgtattttttt 3694079  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 19926940 - 19926980
Alignment:
Q  154 ttttttgagtacattgtaaattgaatacaatgtaatttttt 194  Q
    |||||| |||||  |||||||||||||||||||||||||||    
T  19926940 tttttttagtaccatgtaaattgaatacaatgtaatttttt 19926980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 40142211 - 40142311
Alignment:
Q  2 attgcgtaatcgaatgggagatgattggatgaatgattgtttcgtgacttatattgagagagatgtggcggacaaaattgatgatgagttgattattcaa 101  Q
    ||||| ||||| |||||||||||| |||||||| |||||| || ||||||||||||||||   ||||   ||||| ||||||  ||||||||||||||||    
T  40142211 attgcataatcaaatgggagatgagtggatgaacgattgtctcatgacttatattgagaggagtgtgttagacaacattgatcgtgagttgattattcaa 40142310  T
Q  102 c 102  Q
    |    
T  40142311 c 40142311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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