View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16692_high_1 (Length: 509)
Name: NF16692_high_1
Description: NF16692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16692_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 98 - 494
Target Start/End: Complemental strand, 16870792 - 16870396
Alignment:
| Q |
98 |
gcaaaattgagattcttataccaggaaagccagctttaaatacaaactcccattggtagcatggctgcaccactttgacaagtgtttctccaaattcatg |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16870792 |
gcaaaattgagattcttataccaggaaagccagctttaaatacaaactcccattggtagcatggctgcaccactttgacaagtgtttctccaaattcatg |
16870693 |
T |
|
| Q |
198 |
ccannnnnnnnaattagcctatggttaattcaaaccatggttaaatttaaccatttcacttattcatttacagattcannnnnnngtacttattatatat |
297 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
16870692 |
ccattttttttaattagcctatggttaattcaaaccatggttaaatttaaccatttcacttattcatttacagattcatttttttgtacttattatatat |
16870593 |
T |
|
| Q |
298 |
atttgaacgttttctgtttcatttaaaatacacacaaaaacacaccaattttctttccttatttcactttctcactctctctttttctcaatgttttggt |
397 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
16870592 |
atttgaacgttttccgtttcatttaaaatacacacaaaaacacaccaattttctttccttatttcattttctcactctctctttttctcaatgttttggt |
16870493 |
T |
|
| Q |
398 |
aaaccactttaggtaacccagattagtgctattagtctattattgttatcaccaacactacaaatacaaacatggtatcatagatattcaccaaaag |
494 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16870492 |
aaaccactttaggtaacccagattagtgctattagtctattattgttatcaccaacactacaaatacaaacatggtatcatagatattcaccaaaag |
16870396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 16870879 - 16870832
Alignment:
| Q |
11 |
caaaggcaactgacatagacaacttgaccaccattaaagtaaggttag |
58 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16870879 |
caaaggcaactgacatagacaacttgaccaccattaaagtaaggttag |
16870832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University