View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16692_high_10 (Length: 267)
Name: NF16692_high_10
Description: NF16692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16692_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 2 - 254
Target Start/End: Complemental strand, 37602138 - 37601885
Alignment:
| Q |
2 |
atgaagcagcaaaagacgctgtatatacagcactcattacatttatacttttataaagttggtatgaagtagcaaaagaaagcactagttcaataacnnn |
101 |
Q |
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| T |
37602138 |
atgaagcagcaaaagacgctgtatatacagcactcattacatttatacttttataaagttggtatgaagtagcaaaagaaagcactagttcaataacaaa |
37602039 |
T |
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| Q |
102 |
nnnnnng-gcaagcatgagctcaaagaaaataacaccagataaattcttataagaaataggatgcataataatgacactattaaaacctctaagtacctc |
200 |
Q |
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| T |
37602038 |
aaaaaaaagcaagcatgagctcaaagaaaataacaccaggtaaattcttataagaaataggatgcataataatgacactattaaaacctctaagtacctc |
37601939 |
T |
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| Q |
201 |
tttaaatctaacaatattgggatgcttcaatgacctatgatttataatctccct |
254 |
Q |
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| T |
37601938 |
tttaaatctaacaatattgggatgcttcaatgacctatgatttataatctccct |
37601885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 195 - 254
Target Start/End: Complemental strand, 39410729 - 39410670
Alignment:
| Q |
195 |
tacctctttaaatctaacaatattgggatgcttcaatgacctatgatttataatctccct |
254 |
Q |
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| T |
39410729 |
tacctctttaaatctaatgatattgggatgcttcaaggacctatgatttataatctccct |
39410670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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