View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16692_high_2 (Length: 435)
Name: NF16692_high_2
Description: NF16692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16692_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 3563535 - 3563117
Alignment:
| Q |
1 |
tcctcttgatctactagctttatatccccagttgagatcacttgtgcttaaagtaatcattccagttgaagatttaaaggatcaagtaatatggaagcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3563535 |
tcctcttgatctactagctttatatccccagttgagatcacttgtgcttaaagtaatcattccagttgaagatttaaaggatcaagtaatatggaagcat |
3563436 |
T |
|
| Q |
101 |
acagaaaatggtcagttaaccctcaacgatgcatatgctttcaagaaaactccaggaacaaagaagcattgggcctctacaatttggtgcaaggatattc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3563435 |
acagaaaatggtcagttaaccctcaacgatgcatatgctttcaagaaaactccaggaacaaagaagcattgggcctctacaatttggtgcaaggatattc |
3563336 |
T |
|
| Q |
201 |
ctccgtccaagtctctacttgcttggagattaatgcatgacaaggttcccactgatgaaaagctaatggaaaggggatgtaatcttccaactatgtgctc |
300 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3563335 |
ctccgtccaagtctctgctttcttggagattaatgcatgacaaggttcccactgatgaaaagctaatggaaaggggatgtaatcttccatctatgtgctc |
3563236 |
T |
|
| Q |
301 |
tttatgttcaaggcactcagaaactttatttcatannnnnnnngagtgtaatttcgcaattaatttatggtgttggttggcatcagtccttgatagtaat |
400 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||| |||||||||||||| || |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3563235 |
tttatgttcaatgcactcagaaacttcatttcat-cttttttttagtgtaatttcgcatttgatttatggtgctggttggcatcagtccttgatagtaat |
3563137 |
T |
|
| Q |
401 |
ttacacattcaatccatgga |
420 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
3563136 |
ctacactttcaatccatgga |
3563117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 161 - 289
Target Start/End: Complemental strand, 14170022 - 14169894
Alignment:
| Q |
161 |
aagaagcattgggcctctacaatttggtgcaaggatattcctccgtccaagtctctacttgcttggagattaatgcatgacaaggttcccactgatgaaa |
260 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| | ||| ||||| || ||||||||||||||||||||||| ||||| || ||||||| |
|
|
| T |
14170022 |
aagaaacattgggcctctacaatttggtgcaaggatattcctccattcaaatctctgctagcttggagattaatgcatgacaaagttccaacagatgaaa |
14169923 |
T |
|
| Q |
261 |
agctaatggaaaggggatgtaatcttcca |
289 |
Q |
| |
|
| || |||||||| ||||| || |||||| |
|
|
| T |
14169922 |
aactcatggaaagaggatgcaaccttcca |
14169894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 261
Target Start/End: Complemental strand, 30254141 - 30254104
Alignment:
| Q |
224 |
tggagattaatgcatgacaaggttcccactgatgaaaa |
261 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
30254141 |
tggagattgatgcatgacaaggttccaactgatgaaaa |
30254104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 264
Target Start/End: Complemental strand, 14140463 - 14140390
Alignment:
| Q |
191 |
aaggatattcctccgtccaagtctctacttgcttggagattaatgcatgacaaggttcccactgatgaaaagct |
264 |
Q |
| |
|
||||| |||||||| || ||||||||| | ||||||||| ||||||||||||| | || || ||||||||||| |
|
|
| T |
14140463 |
aaggacattcctccttcaaagtctctaatagcttggagaataatgcatgacaaaatgcctacagatgaaaagct |
14140390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University