View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16692_high_3 (Length: 379)

Name: NF16692_high_3
Description: NF16692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16692_high_3
NF16692_high_3
[»] chr4 (13 HSPs)
chr4 (18-368)||(3748809-3749159)
chr4 (256-366)||(5853280-5853390)
chr4 (256-366)||(5553034-5553144)
chr4 (19-69)||(5564956-5565006)
chr4 (169-365)||(5857963-5858156)
chr4 (19-85)||(5858204-5858270)
chr4 (19-107)||(5553329-5553417)
chr4 (19-59)||(5605283-5605323)
chr4 (19-107)||(5853007-5853095)
chr4 (319-362)||(5583667-5583710)
chr4 (20-59)||(5895194-5895233)
chr4 (256-366)||(5564623-5564733)
chr4 (19-59)||(252338-252378)


Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 368
Target Start/End: Complemental strand, 3749159 - 3748809
Alignment:
Q  18 caatggaacacttccaaattcattgtcaaacctcacacaactgagttacttgaatctgtggtctaacagttttaccggtccaatgccatcctttgacatg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3749159 caatggaacacttccaaattcattgtcaaacctcacacaactgagttacttgaatctgtggtctaacagttttaccggtccaatgccatcctttgacatg 3749060  T
Q  118 gnnnnnnnnctcaccaactcatcatcttctcacaatcaaggattgcataaccttgtcaccattaacttgagcaacaattctatcacgggtgccattcctt 217  Q
    |        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3749059 gaaaaaaaactcaccaactcatcatcttctcacaatcaaggattgcataaccttgtcaccattaacttgagcaacaattctatcacgggtgccattcctt 3748960  T
Q  218 cattcctttttaaacttccattgttaaaaaatatttggctttcattgaaccactttagtaaactagaagaattcacaatcaattcttcctccgtattaga 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3748959 cattcctttttaaacttccattgttaaaaaatatttggctttcattgaaccactttagtaaactagaagaattcacaatcaattcttcctccgtattaga 3748860  T
Q  318 cacccttgatttaagcaacaacgatctatcaggaccttttccaatatctgt 368  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3748859 caccctagatttaagcaacaacgatctatcaggaccttttccaatatctgt 3748809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 256 - 366
Target Start/End: Original strand, 5853280 - 5853390
Alignment:
Q  256 ctttcattgaaccactttagtaaactagaagaattcacaatcaattcttcctccgtattagacacccttgatttaagcaacaacgatctatcaggacctt 355  Q
    |||||||  ||||||||||  || |||||||||||||||||||  | |||||||||||||||  ||||||||||||| | ||| ||||||||||| ||||    
T  5853280 ctttcatccaaccactttaacaatctagaagaattcacaatcatatattcctccgtattagaatcccttgatttaagaagcaatgatctatcagggcctt 5853379  T
Q  356 ttccaatatct 366  Q
    |||||| ||||    
T  5853380 ttccaaaatct 5853390  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 256 - 366
Target Start/End: Complemental strand, 5553144 - 5553034
Alignment:
Q  256 ctttcattgaaccactttagtaaactagaagaattcacaatcaattcttcctccgtattagacacccttgatttaagcaacaacgatctatcaggacctt 355  Q
    |||||||| |||||||| |||||||| ||||||||||||||||  ||||||||  |||||||  ||||||| ||||| | ||| |||| |||||| ||||    
T  5553144 ctttcattcaaccacttcagtaaacttgaagaattcacaatcatatcttcctctatattagaatcccttgaattaagaagcaatgatcaatcagggcctt 5553045  T
Q  356 ttccaatatct 366  Q
    |||||| ||||    
T  5553044 ttccaaaatct 5553034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 5565006 - 5564956
Alignment:
Q  19 aatggaacacttccaaattcattgtcaaacctcacacaactgagttacttg 69  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||||    
T  5565006 aatggaacacttccaaattcattgtcaaacctcacacacctcagttacttg 5564956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 365
Target Start/End: Complemental strand, 5858156 - 5857963
Alignment:
Q  169 cttgtcaccattaacttgagcaacaattctatcacgggtgccattccttcattcctttttaaacttccattgttaaaaaatatttggctttcattgaacc 268  Q
    |||||||| ||| |||| |  ||||||||||| |  |||  ||| ||||| ||||| |||| ||| ||||| ||| || |  || |||||||||| ||||    
T  5858156 cttgtcactatttacttaattaacaattctatgaacggtatcatcccttccttcctatttagactcccattattacaagagcttcggctttcattcaacc 5858057  T
Q  269 actttagtaaactagaagaattcacaatcaattcttcctccgtattagacacccttgatttaagcaacaacgatctatcaggaccttttccaatatc 365  Q
    | ||||||| | ||||||||||||||||||  ||||||||   |||  |||  ||||||||||||| ||| ||| ||||||| ||||||||||||||    
T  5858056 aatttagtatattagaagaattcacaatcatgtcttcctc---attgaacattcttgatttaagcagcaatgatttatcagggccttttccaatatc 5857963  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 5858270 - 5858204
Alignment:
Q  19 aatggaacacttccaaattcattgtcaaacctcacacaactgagttacttgaatctgtggtctaaca 85  Q
    |||||||| ||||||||||||||||||||||||||||| || ||||||||| ||||||  |||||||    
T  5858270 aatggaacccttccaaattcattgtcaaacctcacacacctcagttacttggatctgtcatctaaca 5858204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 5553417 - 5553329
Alignment:
Q  19 aatggaacacttccaaattcattgtcaaacctcacacaactgagttacttgaatctgtggtctaacagttttaccggtccaatgccatc 107  Q
    |||||||||||||| |||||||| |||||||| ||| |||| ||||||||| || |||  | ||||||||| || ||||| || |||||    
T  5553417 aatggaacacttcccaattcattttcaaacctaacagaactaagttacttggatttgtcatttaacagtttcacaggtccgataccatc 5553329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 5605323 - 5605283
Alignment:
Q  19 aatggaacacttccaaattcattgtcaaacctcacacaact 59  Q
    |||||||||||| | ||||||||||||||||||||||||||    
T  5605323 aatggaacactttccaattcattgtcaaacctcacacaact 5605283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 5853007 - 5853095
Alignment:
Q  19 aatggaacacttccaaattcattgtcaaacctcacacaactgagttacttgaatctgtggtctaacagttttaccggtccaatgccatc 107  Q
    |||||||||||||| |||||||| |||||||| ||| |||| ||||||||| || |||  | ||||||||| || ||||| || |||||    
T  5853007 aatggaacacttcccaattcattttcaaacctaacagaactaagttacttggatttgtcatttaacagtttcacaggtccgataccatc 5853095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 5583667 - 5583710
Alignment:
Q  319 acccttgatttaagcaacaacgatctatcaggaccttttccaat 362  Q
    |||||||||||||||||||| ||||||||||| || ||||||||    
T  5583667 acccttgatttaagcaacaatgatctatcagggccatttccaat 5583710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 5895194 - 5895233
Alignment:
Q  20 atggaacacttccaaattcattgtcaaacctcacacaact 59  Q
    ||||||||||||| |||||| |||||||||||||||||||    
T  5895194 atggaacacttcccaattcactgtcaaacctcacacaact 5895233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 366
Target Start/End: Complemental strand, 5564733 - 5564623
Alignment:
Q  256 ctttcattgaaccactttagtaaactagaagaattcacaatcaattcttcctccgtattagacacccttgatttaagcaacaacgatctatcaggacctt 355  Q
    |||||||| |||||||| | || | |||| ||||| |||||||  ||| |||||  |||| |||| ||||||||||||| |||  ||||||| || ||||    
T  5564733 ctttcattcaaccacttcaatacagtagatgaatttacaatcatctctccctcctcattaaacactcttgatttaagcagcaatcatctatctggtcctt 5564634  T
Q  356 ttccaatatct 366  Q
    |||||| ||||    
T  5564633 ttccaacatct 5564623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 252338 - 252378
Alignment:
Q  19 aatggaacacttccaaattcattgtcaaacctcacacaact 59  Q
    ||||| |||||||| ||||||||||||||||||||| ||||    
T  252338 aatggtacacttcccaattcattgtcaaacctcacaaaact 252378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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