View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16692_high_4 (Length: 374)
Name: NF16692_high_4
Description: NF16692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16692_high_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 11 - 359
Target Start/End: Complemental strand, 34754943 - 34754595
Alignment:
| Q |
11 |
cataggaaaaaagagggaaaacatccatacagctagaagtgaaaagttgagaatgataattataagggaaagaataaaactgtgatgtataaaacattca |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34754943 |
cataagaaaaaagagggaaaacatccatacagctagaagtgaaaagttgagaatgataattataagggaaagaataaaactgtgatgtataaaacattca |
34754844 |
T |
|
| Q |
111 |
tcccattaatatactttcacaaattattattggtgtcgtcgtgtcaaatttgtgtttggcgttggttctccatacggtacataatgcctgtaaatgtact |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34754843 |
tcccattaatatactttcacaaattattattggtgtcgtcgtgtcaagtttgtgtttggcgttggttctccatacggtacataatgcctgtaaatgtact |
34754744 |
T |
|
| Q |
211 |
tggctcaagaaccaaaagatgtccgtaactgtacctaactaactcataaaagtaacaaattttaagcagttaagctgcagttcaactaccttcataaaag |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34754743 |
tggctcaagaaccaaaagatgtccgtaactgtacctaactaactcataaaagtaacaaattttaagcagttaagctgcagttcaactaccttcataaaag |
34754644 |
T |
|
| Q |
311 |
tatgtatggcttgaaaagcatgtatgcgttgattatcaaactaagtact |
359 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34754643 |
tatgtatgccttgaaaaacatgtatgcgttgattatcaaactaagtact |
34754595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 180 - 310
Target Start/End: Complemental strand, 11538856 - 11538726
Alignment:
| Q |
180 |
ccatacggtacataatgcctgtaaatgtacttggctcaagaaccaaaagatgtccgtaactgtacctaactaactcataaaagtaacaaattttaagcag |
279 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11538856 |
ccatatggtacataatgcctataaatgtacttcgctcaagaaccaaaaaatgtccgtaactgtacctaactaactcataaaagtaaggtattttaagcag |
11538757 |
T |
|
| Q |
280 |
ttaagctgcagttcaactaccttcataaaag |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
11538756 |
ttaagctgcagttcaactaccttcataaaag |
11538726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 11539683 - 11539592
Alignment:
| Q |
11 |
cataggaaaaaagagggaaaacatccatacagctagaagtgaaaagttgagaatgataattataagggaaagaataaaactgtgatgtataa |
102 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
11539683 |
cataagaaaaaagagggaaaacatccatactgctagaagtgaaaagttgagaatgataattataagggaaagaataaaattgtgatgtataa |
11539592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 34598769 - 34598675
Alignment:
| Q |
8 |
aagcataggaaaaaagagggaaaacatccatacagctagaagtgaaaagttgagaatgataattataagggaaagaataaaactgtgatgtataa |
102 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
34598769 |
aagcataagaaaaaagagggaaaacatccatactgctagaagtgaaaagttgagaatgataattataagggaaagaataaaattgagatgtataa |
34598675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 242 - 310
Target Start/End: Complemental strand, 11564304 - 11564236
Alignment:
| Q |
242 |
tacctaactaactcataaaagtaacaaattttaagcagttaagctgcagttcaactaccttcataaaag |
310 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11564304 |
tacctaactaactcataaaagtaaggtattttaagcagttaagctgcagttcaactaccttcataaaag |
11564236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 242 - 310
Target Start/End: Complemental strand, 11564401 - 11564333
Alignment:
| Q |
242 |
tacctaactaactcataaaagtaacaaattttaagcagttaagctgcagttcaactaccttcataaaag |
310 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11564401 |
tacctaactaactcataaaagtaaggtattttaagcagttaagctgcagttcaactaccttcataaaag |
11564333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 107 - 172
Target Start/End: Complemental strand, 11539492 - 11539427
Alignment:
| Q |
107 |
ttcatcccattaatatactttcacaaattattattggtgtcgtcgtgtcaaatttgtgtttggcgt |
172 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11539492 |
ttcatccacttaatatactttcacaaattattattggtgtcgtcttgtcaaatttgtgtttggcgt |
11539427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 157
Target Start/End: Complemental strand, 10735238 - 10735206
Alignment:
| Q |
125 |
tttcacaaattattattggtgtcgtcgtgtcaa |
157 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
10735238 |
tttcccaaattattattggtgtcgtcgtgtcaa |
10735206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University