View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16692_low_10 (Length: 292)

Name: NF16692_low_10
Description: NF16692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16692_low_10
NF16692_low_10
[»] chr7 (18 HSPs)
chr7 (5-194)||(40773197-40773384)
chr7 (195-292)||(18212973-18213071)
chr7 (194-292)||(5409770-5409874)
chr7 (257-292)||(640134-640169)
chr7 (257-292)||(22602713-22602748)
chr7 (198-292)||(39138465-39138560)
chr7 (196-292)||(32287404-32287501)
chr7 (194-292)||(9778521-9778625)
chr7 (257-292)||(5835268-5835303)
chr7 (257-292)||(9482955-9482990)
chr7 (257-292)||(15902843-15902878)
chr7 (261-292)||(17851452-17851483)
chr7 (257-292)||(20549812-20549847)
chr7 (261-292)||(22868063-22868094)
chr7 (258-292)||(27732243-27732277)
chr7 (260-292)||(12278856-12278888)
chr7 (194-238)||(35862027-35862071)
chr7 (196-232)||(49107887-49107923)
[»] chr2 (23 HSPs)
chr2 (194-292)||(20242666-20242765)
chr2 (195-292)||(41843462-41843565)
chr2 (195-292)||(34784911-34785020)
chr2 (197-292)||(2438661-2438757)
chr2 (257-292)||(5367213-5367248)
chr2 (195-292)||(24009317-24009414)
chr2 (257-289)||(23718050-23718082)
chr2 (257-289)||(24105722-24105754)
chr2 (260-292)||(28524447-28524479)
chr2 (195-238)||(18840953-18840996)
chr2 (257-292)||(18889594-18889629)
chr2 (261-292)||(31808098-31808129)
chr2 (257-292)||(34691808-34691843)
chr2 (257-292)||(34714220-34714255)
chr2 (257-292)||(38355890-38355925)
chr2 (257-292)||(39279696-39279731)
chr2 (257-292)||(44860341-44860376)
chr2 (262-292)||(21616783-21616813)
chr2 (190-238)||(22557026-22557074)
chr2 (264-292)||(28677930-28677958)
chr2 (257-285)||(35056896-35056924)
chr2 (260-292)||(37411250-37411282)
chr2 (194-238)||(37419830-37419874)
[»] chr1 (31 HSPs)
chr1 (197-292)||(1486646-1486747)
chr1 (196-292)||(10577676-10577773)
chr1 (195-292)||(19562556-19562659)
chr1 (194-292)||(25934637-25934747)
chr1 (257-292)||(1864883-1864918)
chr1 (257-292)||(13997904-13997939)
chr1 (257-292)||(30749861-30749896)
chr1 (257-292)||(30771312-30771347)
chr1 (257-292)||(34371734-34371769)
chr1 (257-292)||(44482251-44482286)
chr1 (196-291)||(12918967-12919063)
chr1 (260-292)||(17705592-17705624)
chr1 (257-292)||(5898269-5898304)
chr1 (257-292)||(5944304-5944339)
chr1 (261-292)||(7918218-7918249)
chr1 (257-292)||(9828065-9828100)
chr1 (261-292)||(10233274-10233305)
chr1 (257-292)||(13436479-13436514)
chr1 (257-292)||(20157353-20157388)
chr1 (261-292)||(25361907-25361938)
chr1 (257-292)||(36878482-36878517)
chr1 (257-292)||(40181892-40181927)
chr1 (257-292)||(52903270-52903305)
chr1 (195-292)||(22515827-22515925)
chr1 (262-292)||(25098563-25098593)
chr1 (194-232)||(42325641-42325679)
chr1 (194-231)||(7918153-7918190)
chr1 (263-292)||(19324583-19324612)
chr1 (196-292)||(40258874-40258971)
chr1 (195-240)||(41597410-41597455)
chr1 (196-232)||(45534131-45534167)
[»] chr6 (30 HSPs)
chr6 (195-292)||(34595155-34595253)
chr6 (197-292)||(12696345-12696446)
chr6 (194-292)||(17327589-17327693)
chr6 (196-292)||(5626641-5626734)
chr6 (194-292)||(18367857-18367967)
chr6 (257-292)||(7027263-7027298)
chr6 (257-292)||(7265596-7265631)
chr6 (257-292)||(9025497-9025532)
chr6 (195-240)||(4388154-4388199)
chr6 (260-292)||(11591876-11591908)
chr6 (260-292)||(26562710-26562742)
chr6 (242-292)||(32511657-32511704)
chr6 (257-292)||(7086816-7086851)
chr6 (257-292)||(7378000-7378035)
chr6 (257-292)||(9617455-9617490)
chr6 (257-292)||(9629404-9629439)
chr6 (257-292)||(9658900-9658935)
chr6 (257-292)||(13360375-13360410)
chr6 (261-292)||(19040373-19040404)
chr6 (257-291)||(9027200-9027234)
chr6 (195-292)||(28152119-28152217)
chr6 (196-238)||(31959226-31959268)
chr6 (257-290)||(19044487-19044520)
chr6 (257-290)||(21924938-21924971)
chr6 (259-292)||(30866149-30866182)
chr6 (195-240)||(34446645-34446690)
chr6 (198-238)||(8389411-8389451)
chr6 (194-230)||(8776907-8776943)
chr6 (260-292)||(12627583-12627615)
chr6 (196-232)||(27903963-27903999)
[»] chr3 (17 HSPs)
chr3 (195-292)||(35222959-35223057)
chr3 (194-292)||(40993274-40993373)
chr3 (195-292)||(13845465-13845563)
chr3 (257-292)||(7928471-7928506)
chr3 (195-292)||(18426970-18427068)
chr3 (195-292)||(20503486-20503584)
chr3 (196-292)||(8789489-8789588)
chr3 (196-292)||(10690193-10690300)
chr3 (257-292)||(25093523-25093558)
chr3 (195-292)||(27505267-27505370)
chr3 (257-292)||(38731239-38731274)
chr3 (258-292)||(11507479-11507513)
chr3 (195-292)||(55401096-55401194)
chr3 (257-285)||(8039838-8039866)
chr3 (195-231)||(21861658-21861694)
chr3 (260-292)||(29508465-29508497)
chr3 (194-238)||(49651715-49651759)
[»] chr8 (28 HSPs)
chr8 (190-292)||(26902099-26902213)
chr8 (195-288)||(16641909-16642008)
chr8 (195-292)||(18964198-18964309)
chr8 (196-292)||(43737752-43737849)
chr8 (242-292)||(4786329-4786376)
chr8 (257-292)||(8847277-8847312)
chr8 (257-292)||(11927089-11927124)
chr8 (195-240)||(34450961-34451006)
chr8 (197-292)||(3025572-3025668)
chr8 (194-238)||(29510232-29510276)
chr8 (260-292)||(34897106-34897138)
chr8 (257-292)||(11803280-11803315)
chr8 (257-292)||(11944686-11944721)
chr8 (257-292)||(13844599-13844634)
chr8 (257-292)||(14134720-14134755)
chr8 (257-292)||(28384997-28385032)
chr8 (257-292)||(31236580-31236615)
chr8 (261-291)||(24362209-24362239)
chr8 (258-292)||(34222968-34223002)
chr8 (257-290)||(8293848-8293881)
chr8 (6-39)||(12071651-12071684)
chr8 (195-232)||(25566912-25566949)
chr8 (259-292)||(27213568-27213601)
chr8 (194-231)||(38487156-38487193)
chr8 (194-238)||(8343043-8343087)
chr8 (194-238)||(8343403-8343447)
chr8 (194-238)||(30067967-30068011)
chr8 (195-231)||(36450694-36450730)
[»] chr5 (20 HSPs)
chr5 (199-291)||(30098982-30099075)
chr5 (195-292)||(21576685-21576783)
chr5 (194-238)||(38464312-38464356)
chr5 (196-292)||(6401519-6401627)
chr5 (258-292)||(39758293-39758327)
chr5 (195-292)||(42029773-42029871)
chr5 (260-292)||(41091263-41091295)
chr5 (195-230)||(2548464-2548499)
chr5 (257-292)||(3966524-3966559)
chr5 (194-292)||(6247643-6247730)
chr5 (257-292)||(6471892-6471927)
chr5 (195-230)||(14674333-14674368)
chr5 (257-292)||(28588677-28588712)
chr5 (257-292)||(30502391-30502426)
chr5 (257-292)||(30542734-30542769)
chr5 (259-292)||(18421846-18421879)
chr5 (263-292)||(24273039-24273068)
chr5 (263-292)||(24389146-24389175)
chr5 (260-292)||(5467984-5468016)
chr5 (260-292)||(23015995-23016027)
[»] scaffold0227 (1 HSPs)
scaffold0227 (195-240)||(15045-15090)
[»] chr4 (21 HSPs)
chr4 (195-292)||(12895055-12895154)
chr4 (195-292)||(5414101-5414210)
chr4 (195-292)||(23292926-23293024)
chr4 (207-292)||(49431047-49431133)
chr4 (195-292)||(36635345-36635449)
chr4 (259-292)||(40613471-40613504)
chr4 (194-239)||(40784028-40784073)
chr4 (196-236)||(12323998-12324038)
chr4 (194-238)||(53381529-53381573)
chr4 (257-292)||(5775361-5775396)
chr4 (257-292)||(16189730-16189765)
chr4 (257-292)||(22234893-22234928)
chr4 (257-292)||(40179639-40179674)
chr4 (257-292)||(54580026-54580061)
chr4 (257-290)||(15029788-15029821)
chr4 (194-231)||(17876249-17876286)
chr4 (263-292)||(22440609-22440638)
chr4 (264-292)||(903943-903971)
chr4 (260-292)||(13134471-13134503)
chr4 (194-238)||(16184907-16184951)
chr4 (194-238)||(19482755-19482799)
[»] scaffold0171 (1 HSPs)
scaffold0171 (241-292)||(23441-23494)
[»] scaffold0123 (1 HSPs)
scaffold0123 (258-292)||(44529-44563)
[»] scaffold0003 (1 HSPs)
scaffold0003 (194-240)||(236913-236959)
[»] scaffold0652 (1 HSPs)
scaffold0652 (196-292)||(403-500)
[»] scaffold0306 (1 HSPs)
scaffold0306 (197-292)||(13421-13523)
[»] scaffold0152 (1 HSPs)
scaffold0152 (197-292)||(21804-21906)
[»] scaffold0044 (1 HSPs)
scaffold0044 (257-292)||(53201-53236)
[»] scaffold0036 (1 HSPs)
scaffold0036 (257-292)||(9750-9785)
[»] scaffold0020 (1 HSPs)
scaffold0020 (257-292)||(135315-135350)
[»] scaffold0475 (1 HSPs)
scaffold0475 (194-238)||(3384-3428)


Alignment Details
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 194
Target Start/End: Complemental strand, 40773384 - 40773197
Alignment:
Q  5 gaaaaacatgaggtatttcaaaatacctctcttttgttact-ctctagtcnnnnnnngttactgctactcttctccctctcgttgttaggtttgctt-ct 102  Q
    |||||||||||||||||||||||||||||||||||||| || ||||  |        ||| ||||||| ||||||| |||||||| ||||||||||| ||    
T  40773384 gaaaaacatgaggtatttcaaaatacctctcttttgttgctgctctttt----ttttgttcctgctacacttctccttctcgttgataggtttgctttct 40773289  T
Q  103 tcttctgttaacaatttcatatttttaacggggttgtgggattattgtttcctgtacaatggtattagtaccaaattacctttcctgctagc 194  Q
    ||||||||| ||||||||||||||| |||||| || || |||| |||||| |||||||| |||||||||||||||||||| |||||||||||    
T  40773288 tcttctgtttacaatttcatattttaaacgggtttatgagattcttgtttactgtacaacggtattagtaccaaattaccgttcctgctagc 40773197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 195 - 292
Target Start/End: Original strand, 18212973 - 18213071
Alignment:
Q  195 ctatgaagcacagacactcctcggataaggtgtgtccccgtgtc----aggtgtcgtatccgacaccaccgacacatataattacactgaattatgtgat 290  Q
    |||||||||||||||||||||||||||||| |||||||||||||    ||| ||||| |||||   |||||||||||||||||||||| |||||||||||    
T  18212973 ctatgaagcacagacactcctcggataaggcgtgtccccgtgtcagaaaggggtcgtgtccga---caccgacacatataattacactaaattatgtgat 18213069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 292
Target Start/End: Original strand, 5409770 - 5409874
Alignment:
Q  194 cctatgaagcacagacactcctcggataaggtgtgtccccgtgt----caggtgtcgtatccgacac--caccgacacatataattacactgaattatgt 287  Q
    |||||||||||| |||||||||||||| ||| ||||||| ||||    || ||||||| ||||||||  ||||||||| | ||||| |||||||||||||    
T  5409770 cctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacacgacaccgacacttgtaattgcactgaattatgt 5409869  T
Q  288 gattt 292  Q
    |||||    
T  5409870 gattt 5409874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 640169 - 640134
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||||||||||||||||||||||||    
T  640169 caccgacacatataattacactgaattatgtgattt 640134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 22602713 - 22602748
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||||||||||||||||||||||||    
T  22602713 caccgacacatataattacactgaattatgtgattt 22602748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 292
Target Start/End: Complemental strand, 39138560 - 39138465
Alignment:
Q  198 tgaagcacagacactcctcggataaggtgtgtccccgtgtcag----gtgtcgtatccgacaccaccgacacatataattacactgaattatgtgattt 292  Q
    ||||||||||| |||| | |||||||| |||||||||||| ||    || |||| |||||||||   |||| |||||||||||||||||||||||||||    
T  39138560 tgaagcacagatactcttgggataaggcgtgtccccgtgttagacatgtatcgtgtccgacacc---gacatatataattacactgaattatgtgattt 39138465  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 292
Target Start/End: Original strand, 32287404 - 32287501
Alignment:
Q  196 tatgaagcacagacactcctcggataaggtgtgtccccgtgt----caggtgtcgtatccgacaccaccgacacatataattacactgaattatgtgatt 291  Q
    |||||||||| |||||||||||||| ||||||||||| ||||    ||  |||| | |||||   |||||||||||||| || |||||||||||||||||    
T  32287404 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacttgtcatgtccga---caccgacacatatacttgcactgaattatgtgatt 32287500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 292
Target Start/End: Complemental strand, 9778625 - 9778521
Alignment:
Q  194 cctatgaagcacagacactcctcggataaggtgtgtccccgtgtcag----gtgtcgtatccgacac--caccgacacatataattacactgaattatgt 287  Q
    |||||||||||| ||||||||| |||| ||| ||||||| ||||| |    |||| || ||||||||  ||||||||| | |||||| ||||||||||||    
T  9778625 cctatgaagcacggacactccttggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacacgacaccgacacttgtaattatactgaattatgt 9778526  T
Q  288 gattt 292  Q
    |||||    
T  9778525 gattt 9778521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 5835303 - 5835268
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||||||||||||||||||| ||||    
T  5835303 caccgacacatataattacactgaattatgttattt 5835268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 9482990 - 9482955
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||||||||||||||| ||||||||    
T  9482990 caccgacacatataattacactgaattgtgtgattt 9482955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 15902878 - 15902843
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    |||||||||||||||||||||| |||||||||||||    
T  15902878 caccgacacatataattacactaaattatgtgattt 15902843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 261 - 292
Target Start/End: Complemental strand, 17851483 - 17851452
Alignment:
Q  261 gacacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||||||||||||||||||||    
T  17851483 gacacatataattacactgaattatgtgattt 17851452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 20549847 - 20549812
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    |||||||||||||||||||||||||||| |||||||    
T  20549847 caccgacacatataattacactgaattacgtgattt 20549812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 261 - 292
Target Start/End: Complemental strand, 22868094 - 22868063
Alignment:
Q  261 gacacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||||||||||||||||||||    
T  22868094 gacacatataattacactgaattatgtgattt 22868063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 292
Target Start/End: Original strand, 27732243 - 27732277
Alignment:
Q  258 accgacacatataattacactgaattatgtgattt 292  Q
    |||||||||||||||||||||||||||||| ||||    
T  27732243 accgacacatataattacactgaattatgtaattt 27732277  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 292
Target Start/End: Complemental strand, 12278888 - 12278856
Alignment:
Q  260 cgacacatataattacactgaattatgtgattt 292  Q
    |||||||||||||||||||||||||||| ||||    
T  12278888 cgacacatataattacactgaattatgtcattt 12278856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 35862071 - 35862027
Alignment:
Q  194 cctatgaagcacagacactcctcggataaggtgtgtccccgtgtc 238  Q
    |||||||||||| |||||||||||||| ||| |||||| ||||||    
T  35862071 cctatgaagcacggacactcctcggattaggcgtgtcctcgtgtc 35862027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 232
Target Start/End: Complemental strand, 49107923 - 49107887
Alignment:
Q  196 tatgaagcacagacactcctcggataaggtgtgtccc 232  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  49107923 tatgaagcacagacactcctcggattaggtatgtccc 49107887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 194 - 292
Target Start/End: Original strand, 20242666 - 20242765
Alignment:
Q  194 cctatgaagcacagacactcctcggataaggtgtgtccccgtgtcag----gtgtcgtatccgacaccaccgacacatataattacactgaattatgtga 289  Q
    |||||||||||||||||||| |||||||||| |||||| ||||||||    |||| || |||||   |||||||||||||||||||||||||||||||||    
T  20242666 cctatgaagcacagacactcttcggataaggcgtgtcctcgtgtcagacacgtgttgtgtccga---caccgacacatataattacactgaattatgtga 20242762  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 195 - 292
Target Start/End: Complemental strand, 41843565 - 41843462
Alignment:
Q  195 ctatgaagcacagacactcctcggataaggtgtgtccccgtgtcag----gtgtcgtatccgacac--caccgacacatataattacactgaattatgtg 288  Q
    |||||||||||||||||||||||||||| | ||||||||||||| |    ||||||  ||||||||  |||||||||||||||||| || ||||||||||    
T  41843565 ctatgaagcacagacactcctcggataaagcgtgtccccgtgtcggacacgtgtcgcgtccgacacaacaccgacacatataattataccgaattatgtg 41843466  T
Q  289 attt 292  Q
    ||||    
T  41843465 attt 41843462  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 195 - 292
Target Start/End: Original strand, 34784911 - 34785020
Alignment:
Q  195 ctatgaagcacagacactcctcggataaggtgtgtccccgtgt----caggtgtcgtatccgacac--------caccgacacatataattacactgaat 282  Q
    ||||||||||||||||||||||| |||||| ||||||||||||    |||||||||| ||||| ||        |||||||||||||||||||||| |||    
T  34784911 ctatgaagcacagacactcctcgaataaggcgtgtccccgtgtcagacaggtgtcgtgtccgataccgacacgacaccgacacatataattacactaaat 34785010  T
Q  283 tatgtgattt 292  Q
    ||||||||||    
T  34785011 tatgtgattt 34785020  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 197 - 292
Target Start/End: Original strand, 2438661 - 2438757
Alignment:
Q  197 atgaagcacagacactcctcggataaggtgtgtccccgtgt----caggtgtcgtatccgacaccaccgacacatataattacactgaattatgtgattt 292  Q
    ||||||||| |||||||||||||| ||| ||||||| ||||    || ||||||| |||||   ||||||||| | ||||||||||||||||||||||||    
T  2438661 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccga---caccgacacttgtaattacactgaattatgtgattt 2438757  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 5367248 - 5367213
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||||||||||||||||||||||||    
T  5367248 caccgacacatataattacactgaattatgtgattt 5367213  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 292
Target Start/End: Complemental strand, 24009414 - 24009317
Alignment:
Q  195 ctatgaagcacagacactcctcggataaggtgtgtccccgtgtcag----gtgtcgtatccgacaccaccgacacatataattacactgaattatgtgat 290  Q
    ||||||||||| ||||||||| |||||||| |||||||||||||||    ||||||| |||||   |||||||||||| | |||||||| ||| ||||||    
T  24009414 ctatgaagcacggacactccttggataaggcgtgtccccgtgtcagacacgtgtcgtgtccga---caccgacacata-atttacactgcattttgtgat 24009319  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 289
Target Start/End: Complemental strand, 23718082 - 23718050
Alignment:
Q  257 caccgacacatataattacactgaattatgtga 289  Q
    |||||||||||||||||||||||||||||||||    
T  23718082 caccgacacatataattacactgaattatgtga 23718050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 289
Target Start/End: Complemental strand, 24105754 - 24105722
Alignment:
Q  257 caccgacacatataattacactgaattatgtga 289  Q
    |||||||||||||||||||||||||||||||||    
T  24105754 caccgacacatataattacactgaattatgtga 24105722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 292
Target Start/End: Complemental strand, 28524479 - 28524447
Alignment:
Q  260 cgacacatataattacactgaattatgtgattt 292  Q
    |||||||||||||||||||||||||||||||||    
T  28524479 cgacacatataattacactgaattatgtgattt 28524447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 18840953 - 18840996
Alignment:
Q  195 ctatgaagcacagacactcctcggataaggtgtgtccccgtgtc 238  Q
    ||||||||||| |||||||||||||| ||||||||||| |||||    
T  18840953 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtc 18840996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 18889594 - 18889629
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    ||||||||||||| ||||||||||||||||||||||    
T  18889594 caccgacacatatgattacactgaattatgtgattt 18889629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 261 - 292
Target Start/End: Complemental strand, 31808129 - 31808098
Alignment:
Q  261 gacacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||||||||||||||||||||    
T  31808129 gacacatataattacactgaattatgtgattt 31808098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 34691808 - 34691843
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||||||||||||||||| ||||||    
T  34691808 caccgacacatataattacactgaattatatgattt 34691843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 34714220 - 34714255
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||||||||||||||||| ||||||    
T  34714220 caccgacacatataattacactgaattatatgattt 34714255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 38355890 - 38355925
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    |||||||||||||||| |||||||||||||||||||    
T  38355890 caccgacacatataatcacactgaattatgtgattt 38355925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 39279731 - 39279696
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||||||||||||||||| ||||||    
T  39279731 caccgacacatataattacactgaattatttgattt 39279696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 44860376 - 44860341
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    |||||||||||||||||||||||||||||| |||||    
T  44860376 caccgacacatataattacactgaattatgcgattt 44860341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 292
Target Start/End: Complemental strand, 21616813 - 21616783
Alignment:
Q  262 acacatataattacactgaattatgtgattt 292  Q
    |||||||||||||||||||||||||||||||    
T  21616813 acacatataattacactgaattatgtgattt 21616783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 22557074 - 22557026
Alignment:
Q  190 ctagcctatgaagcacagacactcctcggataaggtgtgtccccgtgtc 238  Q
    |||| ||||||||||||||||||| |||||| |||||| | ||||||||    
T  22557074 ctagtctatgaagcacagacactcatcggattaggtgtctgcccgtgtc 22557026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 292
Target Start/End: Complemental strand, 28677958 - 28677930
Alignment:
Q  264 acatataattacactgaattatgtgattt 292  Q
    |||||||||||||||||||||||||||||    
T  28677958 acatataattacactgaattatgtgattt 28677930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 285
Target Start/End: Complemental strand, 35056924 - 35056896
Alignment:
Q  257 caccgacacatataattacactgaattat 285  Q
    |||||||||||||||||||||||||||||    
T  35056924 caccgacacatataattacactgaattat 35056896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 37411250 - 37411282
Alignment:
Q  260 cgacacatataattacactgaattatgtgattt 292  Q
    ||||||||||||| |||||||||||||||||||    
T  37411250 cgacacatataatcacactgaattatgtgattt 37411282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 37419874 - 37419830
Alignment:
Q  194 cctatgaagcacagacactcctcggataaggtgtgtccccgtgtc 238  Q
    |||||||||||| |||||||||||||| ||| ||||||| |||||    
T  37419874 cctatgaagcacggacactcctcggattaggcgtgtcccggtgtc 37419830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 197 - 292
Target Start/End: Original strand, 1486646 - 1486747
Alignment:
Q  197 atgaagcacagacactcctcggataaggtgtgtccccgtgtcag----gtgtcgtatccgacac--caccgacacatataattacactgaattatgtgat 290  Q
    |||||||||||||||||||||||| ||| ||||||| ||||| |    ||||||| ||||||||  ||||||||| ||||||||||||||||||||||||    
T  1486646 atgaagcacagacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacacgacaccgacacttataattacactgaattatgtgat 1486745  T
Q  291 tt 292  Q
    ||    
T  1486746 tt 1486747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 292
Target Start/End: Original strand, 10577676 - 10577773
Alignment:
Q  196 tatgaagcacagacactcctcggataaggtgtgtccccgtgtcag----gtgtcgtatccgacaccaccgacacatataattacactgaattatgtgatt 291  Q
    |||||||||| ||||||||| |||||||| |||||||||||||||    | ||||| ||||   || ||||||||||||||||||||| ||| |||||||    
T  10577676 tatgaagcacggacactccttggataaggcgtgtccccgtgtcagacacgcgtcgtgtccg---cccccgacacatataattacactgcattttgtgatt 10577772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 292
Target Start/End: Original strand, 19562556 - 19562659
Alignment:
Q  195 ctatgaagcacagacactcctcggataaggtgtgtccccgtgt----caggtgtcgtatccgacac---caccgacacatataattacactgaattatgt 287  Q
    ||||||||||| |||||||||||||| ||||||||||| ||||    || |||| |||||||||||   |||| |||||||||||||||||||| ||||     
T  19562556 ctatgaagcac-gacactcctcggattaggtgtgtccctgtgtcggacacgtgttgtatccgacactgacacctacacatataattacactgaactatga 19562654  T
Q  288 gattt 292  Q
    |||||    
T  19562655 gattt 19562659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 194 - 292
Target Start/End: Complemental strand, 25934747 - 25934637
Alignment:
Q  194 cctatgaagcacagacactcctcggataaggtgtgtccccgtgtcag----gtgtcgtatccgacacc--------accgacacatataattacactgaa 281  Q
    |||||||||||| ||||||||| |||||||| || ||||||||||||    ||||||| |||||||||        |||||||||||||||||||||| |    
T  25934747 cctatgaagcacggacactccttggataaggcgtatccccgtgtcagacacgtgtcgtgtccgacaccgacacgataccgacacatataattacactgta 25934648  T
Q  282 ttatgtgattt 292  Q
    || ||||||||    
T  25934647 ttttgtgattt 25934637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 1864883 - 1864918
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||||||||||||||||||||||||    
T  1864883 caccgacacatataattacactgaattatgtgattt 1864918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 13997939 - 13997904
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||||||||||||||||||||||||    
T  13997939 caccgacacatataattacactgaattatgtgattt 13997904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 30749896 - 30749861
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||||||||||||||||||||||||    
T  30749896 caccgacacatataattacactgaattatgtgattt 30749861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 30771347 - 30771312
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||||||||||||||||||||||||    
T  30771347 caccgacacatataattacactgaattatgtgattt 30771312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 34371769 - 34371734
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||||||||||||||||||||||||    
T  34371769 caccgacacatataattacactgaattatgtgattt 34371734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 44482286 - 44482251
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||||||||||||||||||||||||    
T  44482286 caccgacacatataattacactgaattatgtgattt 44482251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 291
Target Start/End: Complemental strand, 12919063 - 12918967
Alignment:
Q  196 tatgaagcacagacactcctcggataaggtgtgtccccgtgtcag----gtgtcgtatccgacaccaccgacacatataattacactgaattatgtgatt 291  Q
    ||||||||||  ||||| ||||||||||  |||||||||||||||    ||||||| ||||| ||||   ||||||||||| ||| ||||||||||||||    
T  12919063 tatgaagcacgaacacttctcggataagccgtgtccccgtgtcagacacgtgtcgtgtccgatacca---acacatataatcacattgaattatgtgatt 12918967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 17705592 - 17705624
Alignment:
Q  260 cgacacatataattacactgaattatgtgattt 292  Q
    |||||||||||||||||||||||||||||||||    
T  17705592 cgacacatataattacactgaattatgtgattt 17705624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 5898269 - 5898304
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    ||||||| ||||||||||||||||||||||||||||    
T  5898269 caccgacgcatataattacactgaattatgtgattt 5898304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 5944339 - 5944304
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    ||||||||| ||||||||||||||||||||||||||    
T  5944339 caccgacacttataattacactgaattatgtgattt 5944304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 261 - 292
Target Start/End: Original strand, 7918218 - 7918249
Alignment:
Q  261 gacacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||||||||||||||||||||    
T  7918218 gacacatataattacactgaattatgtgattt 7918249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 9828100 - 9828065
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  9828100 caccgacacataaaattacactgaattatgtgattt 9828065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 261 - 292
Target Start/End: Complemental strand, 10233305 - 10233274
Alignment:
Q  261 gacacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||||||||||||||||||||    
T  10233305 gacacatataattacactgaattatgtgattt 10233274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 13436514 - 13436479
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    |||| |||||||||||||||||||||||||||||||    
T  13436514 caccaacacatataattacactgaattatgtgattt 13436479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 20157353 - 20157388
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    ||||||||||||| ||||||||||||||||||||||    
T  20157353 caccgacacatatgattacactgaattatgtgattt 20157388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 261 - 292
Target Start/End: Complemental strand, 25361938 - 25361907
Alignment:
Q  261 gacacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||||||||||||||||||||    
T  25361938 gacacatataattacactgaattatgtgattt 25361907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 36878517 - 36878482
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    ||||||||| ||||||||||||||||||||||||||    
T  36878517 caccgacacctataattacactgaattatgtgattt 36878482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 40181927 - 40181892
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    |||||| |||||||||||||||||||||||||||||    
T  40181927 caccgatacatataattacactgaattatgtgattt 40181892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 52903305 - 52903270
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||||||||||||||||| ||||||    
T  52903305 caccgacacatataattacactgaattatatgattt 52903270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 292
Target Start/End: Original strand, 22515827 - 22515925
Alignment:
Q  195 ctatgaagcacagacactcctcggataaggtgtgtccccgtgtc----aggtgtcgtatccgacaccaccgacacatataattacactgaattatgtgat 290  Q
    ||||||||||| |||||||||||||| ||| ||||| | |||||    | ||||||| |||||   ||||||||| | |||||||||| |||||||||||    
T  22515827 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtcggatatgtgtcgtgtccga---caccgacacttgtaattacactaaattatgtgat 22515923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 292
Target Start/End: Original strand, 25098563 - 25098593
Alignment:
Q  262 acacatataattacactgaattatgtgattt 292  Q
    |||||||||||||||||||||||||||||||    
T  25098563 acacatataattacactgaattatgtgattt 25098593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 232
Target Start/End: Complemental strand, 42325679 - 42325641
Alignment:
Q  194 cctatgaagcacagacactcctcggataaggtgtgtccc 232  Q
    |||||||||||||||||||||||| || |||||||||||    
T  42325679 cctatgaagcacagacactcctcgaattaggtgtgtccc 42325641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 7918153 - 7918190
Alignment:
Q  194 cctatgaagcacagacactcctcggataaggtgtgtcc 231  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  7918153 cctatgaagcacggacactcctcggattaggtgtgtcc 7918190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 292
Target Start/End: Complemental strand, 19324612 - 19324583
Alignment:
Q  263 cacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||||||||||||||||||    
T  19324612 cacatataattacactgaattatgtgattt 19324583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 292
Target Start/End: Original strand, 40258874 - 40258971
Alignment:
Q  196 tatgaagcacagacactcctcggataaggtgtgtccccgtgt----caggtgtcgtatccgacaccaccgacacatataattacactgaattatgtgatt 291  Q
    |||||||||  |||||||||||||| ||| ||||||  ||||    |||||||||| || ||   ||||||||| | |||||||||||||||||||||||    
T  40258874 tatgaagcatggacactcctcggattaggcgtgtcctggtgtcggacaggtgtcgtgtctga---caccgacacttgtaattacactgaattatgtgatt 40258970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 41597410 - 41597455
Alignment:
Q  195 ctatgaagcacagacactcctcggataaggtgtgtccccgtgtcag 240  Q
    ||||||||||||||||||||| |||||| | || ||||||||||||    
T  41597410 ctatgaagcacagacactccttggataaagcgtatccccgtgtcag 41597455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 45534131 - 45534167
Alignment:
Q  196 tatgaagcacagacactcctcggataaggtgtgtccc 232  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  45534131 tatgaagcacaaacactcctcggataaggcgtgtccc 45534167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 195 - 292
Target Start/End: Complemental strand, 34595253 - 34595155
Alignment:
Q  195 ctatgaagcacagacactcctcggataaggtgtgtccccgtgtcag----gtgtcgtatccgacaccaccgacacatataattacactgaattatgtgat 290  Q
    ||||||||||| |||||||||||||| ||||||||||| |||||||    ||||||| |||||   ||||||||| | ||||||||||||||||||||||    
T  34595253 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcagacacgtgtcgtgtccga---caccgacacttgtaattacactgaattatgtgat 34595157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 197 - 292
Target Start/End: Complemental strand, 12696446 - 12696345
Alignment:
Q  197 atgaagcacagacactcctcggataaggtgtgtccccgtgtcag----gtgtcgtatccgacac--caccgacacatataattacactgaattatgtgat 290  Q
    ||||||||||||||||||| |||||||||||||||| |||||||    ||||||| ||||||||  ||| ||||| | ||||||||||||||||||| ||    
T  12696446 atgaagcacagacactccttggataaggtgtgtcccggtgtcagacacgtgtcgtgtccgacacgacactgacacttgtaattacactgaattatgtaat 12696347  T
Q  291 tt 292  Q
    ||    
T  12696346 tt 12696345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 292
Target Start/End: Original strand, 17327589 - 17327693
Alignment:
Q  194 cctatgaagcacagacactcctcggataaggtgtgtccccgtgtcag----gtgtcgtatccgacac--caccgacacatataattacactgaattatgt 287  Q
    |||||||||||| |||||||||||||| ||| ||||||| |||||||    ||||||| ||||||||  ||| |||||||||| ||||||| ||||||||    
T  17327589 cctatgaagcacggacactcctcggattaggcgtgtccctgtgtcagacacgtgtcgtgtccgacacgacactgacacatatagttacactaaattatgt 17327688  T
Q  288 gattt 292  Q
    |||||    
T  17327689 gattt 17327693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 292
Target Start/End: Original strand, 5626641 - 5626734
Alignment:
Q  196 tatgaagcacagacactcctcggataaggtgtgtccccgtgtcaggtgtcgtatccgacaccaccgacacatataattacactgaattatgtgattt 292  Q
    ||||||||||| |||||||||||||||||  ||| ||| |  |||||||||| |||||   |||||||||||||| |||||||||| || |||||||    
T  5626641 tatgaagcacaaacactcctcggataaggcatgttcccattacaggtgtcgtgtccga---caccgacacatatatttacactgaactaagtgattt 5626734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 194 - 292
Target Start/End: Complemental strand, 18367967 - 18367857
Alignment:
Q  194 cctatgaagcacagacactcctcggataaggtgtgtccccgtgtcag----gtgtcgtatccgacac--------caccgacacatataattacactgaa 281  Q
    |||||||||||| ||||||||| |||||||| |||||||||||||||    ||||||| || |||||        ||||||||||||||||||||||| |    
T  18367967 cctatgaagcacggacactccttggataaggcgtgtccccgtgtcagacatgtgtcgtgtctgacaccgacacgacaccgacacatataattacactgca 18367868  T
Q  282 ttatgtgattt 292  Q
    || ||||||||    
T  18367867 ttttgtgattt 18367857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 7027298 - 7027263
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||||||||||||||||||||||||    
T  7027298 caccgacacatataattacactgaattatgtgattt 7027263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 7265596 - 7265631
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||||||||||||||||||||||||    
T  7265596 caccgacacatataattacactgaattatgtgattt 7265631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 9025497 - 9025532
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||||||||||||||||||||||||    
T  9025497 caccgacacatataattacactgaattatgtgattt 9025532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 4388199 - 4388154
Alignment:
Q  195 ctatgaagcacagacactcctcggataaggtgtgtccccgtgtcag 240  Q
    |||||||||||||||||| ||||||||||| |||||| ||||||||    
T  4388199 ctatgaagcacagacacttctcggataaggcgtgtcctcgtgtcag 4388154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 11591876 - 11591908
Alignment:
Q  260 cgacacatataattacactgaattatgtgattt 292  Q
    |||||||||||||||||||||||||||||||||    
T  11591876 cgacacatataattacactgaattatgtgattt 11591908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 292
Target Start/End: Complemental strand, 26562742 - 26562710
Alignment:
Q  260 cgacacatataattacactgaattatgtgattt 292  Q
    |||||||||||||||||||||||||||||||||    
T  26562742 cgacacatataattacactgaattatgtgattt 26562710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 292
Target Start/End: Original strand, 32511657 - 32511704
Alignment:
Q  242 tgtcgtatccgacaccaccgacacatataattacactgaattatgtgattt 292  Q
    |||||||||||||||||   |||| ||||||||||||||||||||||||||    
T  32511657 tgtcgtatccgacacca---acacttataattacactgaattatgtgattt 32511704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 7086851 - 7086816
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    |||||||||||||||||||||| |||||||||||||    
T  7086851 caccgacacatataattacactaaattatgtgattt 7086816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 7378035 - 7378000
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    |||||||||||||||||||| |||||||||||||||    
T  7378035 caccgacacatataattacattgaattatgtgattt 7378000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 9617490 - 9617455
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    |||||||||||||||||||| |||||||||||||||    
T  9617490 caccgacacatataattacattgaattatgtgattt 9617455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 9629439 - 9629404
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    |||||||||||||||||||| |||||||||||||||    
T  9629439 caccgacacatataattacattgaattatgtgattt 9629404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 9658935 - 9658900
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    |||||||| |||||||||||||||||||||||||||    
T  9658935 caccgacaaatataattacactgaattatgtgattt 9658900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 13360375 - 13360410
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    |||||| |||||||||||||||||||||||||||||    
T  13360375 caccgaaacatataattacactgaattatgtgattt 13360410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 261 - 292
Target Start/End: Complemental strand, 19040404 - 19040373
Alignment:
Q  261 gacacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||||||||||||||||||||    
T  19040404 gacacatataattacactgaattatgtgattt 19040373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 291
Target Start/End: Complemental strand, 9027234 - 9027200
Alignment:
Q  257 caccgacacatataattacactgaattatgtgatt 291  Q
    ||||||||||||||||||||| |||||||||||||    
T  9027234 caccgacacatataattacacggaattatgtgatt 9027200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 292
Target Start/End: Complemental strand, 28152217 - 28152119
Alignment:
Q  195 ctatgaagcacagacactcctcggataaggtgtgtccccgtgt----caggtgtcgtatccgacaccaccgacacatataattacactgaattatgtgat 290  Q
    |||||||||||  ||||||||||||| |||  |||||| ||||    || ||||||| |||||   ||||||||| | ||||||||||||||||||||||    
T  28152217 ctatgaagcacgaacactcctcggattaggcctgtcccggtgtcggacacgtgtcgtgtccga---caccgacacttgtaattacactgaattatgtgat 28152121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 31959268 - 31959226
Alignment:
Q  196 tatgaagcacagacactcctcggataaggtgtgtccccgtgtc 238  Q
    |||||||||| |||||||||||||| ||||||||||| |||||    
T  31959268 tatgaagcacggacactcctcggattaggtgtgtcccggtgtc 31959226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Complemental strand, 19044520 - 19044487
Alignment:
Q  257 caccgacacatataattacactgaattatgtgat 290  Q
    |||||||||||||||| |||||||||||||||||    
T  19044520 caccgacacatataataacactgaattatgtgat 19044487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Original strand, 21924938 - 21924971
Alignment:
Q  257 caccgacacatataattacactgaattatgtgat 290  Q
    ||||||||||||||||||||||||||||| ||||    
T  21924938 caccgacacatataattacactgaattatttgat 21924971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 292
Target Start/End: Original strand, 30866149 - 30866182
Alignment:
Q  259 ccgacacatataattacactgaattatgtgattt 292  Q
    |||||||||||||||||| |||||||||||||||    
T  30866149 ccgacacatataattacattgaattatgtgattt 30866182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 34446690 - 34446645
Alignment:
Q  195 ctatgaagcacagacactcctcggataaggtgtgtccccgtgtcag 240  Q
    ||||||||||| ||||||||| |||| ||||||||||| |||||||    
T  34446690 ctatgaagcacggacactccttggattaggtgtgtcccagtgtcag 34446645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 8389411 - 8389451
Alignment:
Q  198 tgaagcacagacactcctcggataaggtgtgtccccgtgtc 238  Q
    |||||||| |||||||||||||| ||||||||||| |||||    
T  8389411 tgaagcacggacactcctcggattaggtgtgtcccggtgtc 8389451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 8776907 - 8776943
Alignment:
Q  194 cctatgaagcacagacactcctcggataaggtgtgtc 230  Q
    |||||||||||| |||||||||||||| |||||||||    
T  8776907 cctatgaagcacggacactcctcggattaggtgtgtc 8776943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 12627583 - 12627615
Alignment:
Q  260 cgacacatataattacactgaattatgtgattt 292  Q
    |||||||||| ||||||||||||||||||||||    
T  12627583 cgacacatattattacactgaattatgtgattt 12627615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 27903963 - 27903999
Alignment:
Q  196 tatgaagcacagacactcctcggataaggtgtgtccc 232  Q
    |||||| |||||||||||||||||| |||||||||||    
T  27903963 tatgaatcacagacactcctcggattaggtgtgtccc 27903999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 195 - 292
Target Start/End: Complemental strand, 35223057 - 35222959
Alignment:
Q  195 ctatgaagcacagacactcctcggataaggtgtgtccccgtgtcag----gtgtcgtatccgacaccaccgacacatataattacactgaattatgtgat 290  Q
    ||||||||||| |||||||||||||||| | |||||||||||||||    ||||| | |||||   |||||||||||||||||||| |||||||||||||    
T  35223057 ctatgaagcacggacactcctcggataaagcgtgtccccgtgtcagacacgtgtcatgtccga---caccgacacatataattacattgaattatgtgat 35222961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 194 - 292
Target Start/End: Original strand, 40993274 - 40993373
Alignment:
Q  194 cctatgaagcacagacactcctcggataaggtgtgtccccgtgt----caggtgtcgtatccgacaccaccgacacatataattacactgaattatgtga 289  Q
    |||||||||||  |||||||||||||| ||| ||||||| ||||    || ||||||| |||||   |||||||||||||||||||||||||||||||||    
T  40993274 cctatgaagcatggacactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccga---caccgacacatataattacactgaattatgtga 40993370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 195 - 292
Target Start/End: Original strand, 13845465 - 13845563
Alignment:
Q  195 ctatgaagcacagacactcctcggataaggtgtgtccccgtgtcag----gtgtcgtatccgacaccaccgacacatataattacactgaattatgtgat 290  Q
    ||||||||||| ||||||||| |||||||| ||||| |||||||||    || |||| |||||   ||||||||||||||||||||||| ||| ||||||    
T  13845465 ctatgaagcacggacactccttggataaggcgtgtctccgtgtcagacacgtctcgtgtccga---caccgacacatataattacactgcattttgtgat 13845561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 7928506 - 7928471
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||||||||||||||||||||||||    
T  7928506 caccgacacatataattacactgaattatgtgattt 7928471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 292
Target Start/End: Complemental strand, 18427068 - 18426970
Alignment:
Q  195 ctatgaagcacagacactcctcggataaggtgtgtccccgtgtcag----gtgtcgtatccgacaccaccgacacatataattacactgaattatgtgat 290  Q
    ||||||| ||| |||||||||| ||| ||||||||||| ||| | |    |||||||||||||||||   |||| |||||||||||| ||||||||||||    
T  18427068 ctatgaaacacggacactcctcagattaggtgtgtcccggtgccggacacgtgtcgtatccgacacc---gacatatataattacaccgaattatgtgat 18426972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 292
Target Start/End: Complemental strand, 20503584 - 20503486
Alignment:
Q  195 ctatgaagcacagacactcctcggataaggtgtgtccccgtgtcag----gtgtcgtatccgacaccaccgacacatataattacactgaattatgtgat 290  Q
    ||||||||||| |||||||||||||| ||| ||||||| |||||||    ||||||| ||   || ||||||||| | ||||||||||||||||||| ||    
T  20503584 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcagacatgtgtcgtgtc---caacaccgacacttgtaattacactgaattatgtcat 20503488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 292
Target Start/End: Original strand, 8789489 - 8789588
Alignment:
Q  196 tatgaagcacagacactcctcggataaggtgtgtccccgtgtcag------gtgtcgtatccgacaccaccgacacatataattacactgaattatgtga 289  Q
    |||||||||| |||||||||||||| ||| ||||| | ||||| |      ||||||| |||||||||   ||||||||||||||||| |||||||||||    
T  8789489 tatgaagcacggacactcctcggattaggcgtgtctcggtgtccgacatgtgtgtcgtgtccgacacc---gacacatataattacacggaattatgtga 8789585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 292
Target Start/End: Original strand, 10690193 - 10690300
Alignment:
Q  196 tatgaagcacagacactcctcggataaggtgtgtccccgtgtcag----gtgtcgtatccgacacca-------ccgacacatataattacactgaatta 284  Q
    ||||||||||| ||| ||||||||| ||||||||| |||||||||    |||| || |||||||| |       |||||| |||||||||||||||||||    
T  10690193 tatgaagcacatacattcctcggattaggtgtgtcgccgtgtcagacacgtgttgtgtccgacactaaacaataccgacaaatataattacactgaatta 10690292  T
Q  285 tgtgattt 292  Q
    ||||||||    
T  10690293 tgtgattt 10690300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 25093558 - 25093523
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||||||||||||||| ||||||||    
T  25093558 caccgacacatataattacactgaattgtgtgattt 25093523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 292
Target Start/End: Complemental strand, 27505370 - 27505267
Alignment:
Q  195 ctatgaagcacagacactcctcggataaggtgtgtccccgtgtcag----gtgtcgtatccgacac--caccgacacatataattacactgaattatgtg 288  Q
    ||||||||||| |||||||||||||| |||  |||||| ||||| |    ||||||| || |||||  ||||||||| | |||||||||| |||||||||    
T  27505370 ctatgaagcacggacactcctcggattaggcatgtcccggtgtcggacacgtgtcgtgtcagacacgacaccgacacttgtaattacacttaattatgtg 27505271  T
Q  289 attt 292  Q
    ||||    
T  27505270 attt 27505267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 38731274 - 38731239
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||| ||||||||||||||||||||    
T  38731274 caccgacacatataactacactgaattatgtgattt 38731239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 292
Target Start/End: Original strand, 11507479 - 11507513
Alignment:
Q  258 accgacacatataattacactgaattatgtgattt 292  Q
    ||||| |||||||||||||||||||||||||||||    
T  11507479 accgaaacatataattacactgaattatgtgattt 11507513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 292
Target Start/End: Complemental strand, 55401194 - 55401096
Alignment:
Q  195 ctatgaagcacagacactcctcggataaggtgtgtccccgtgt----caggtgtcgtatccgacaccaccgacacatataattacactgaattatgtgat 290  Q
    ||||||||||| |||||||||||||| ||| ||||| | ||||    || ||||||| |||||   ||||||||| | |||||||||| |||||||||||    
T  55401194 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtcggacacgtgtcgtgtccga---caccgacacttgtaattacactaaattatgtgat 55401098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 285
Target Start/End: Original strand, 8039838 - 8039866
Alignment:
Q  257 caccgacacatataattacactgaattat 285  Q
    |||||||||||||||||||||||||||||    
T  8039838 caccgacacatataattacactgaattat 8039866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 21861694 - 21861658
Alignment:
Q  195 ctatgaagcacagacactcctcggataaggtgtgtcc 231  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  21861694 ctatgaagcacggacactcctcggattaggtgtgtcc 21861658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 292
Target Start/End: Complemental strand, 29508497 - 29508465
Alignment:
Q  260 cgacacatataattacactgaattatgtgattt 292  Q
    |||||||||||||||||||||||||| ||||||    
T  29508497 cgacacatataattacactgaattatatgattt 29508465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 49651715 - 49651759
Alignment:
Q  194 cctatgaagcacagacactcctcggataaggtgtgtccccgtgtc 238  Q
    |||||||||||| |||||| ||||||| ||||||||||| |||||    
T  49651715 cctatgaagcacggacacttctcggattaggtgtgtcccggtgtc 49651759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 190 - 292
Target Start/End: Original strand, 26902099 - 26902213
Alignment:
Q  190 ctagcctatgaagcacagacactcctcggataaggtgtgtccccgtgtcag----gtgtcgtatccgacac--------caccgacacatataattacac 277  Q
    |||| ||||||||||| |||||||||| ||||||| ||||||||||| |||    ||||||| ||||||||        |||||||||||||||||||||    
T  26902099 ctagtctatgaagcacggacactcctcagataaggcgtgtccccgtgccagacacgtgtcgtgtccgacactcatacgacaccgacacatataattacac 26902198  T
Q  278 tgaattatgtgattt 292  Q
    |||||||||||||||    
T  26902199 tgaattatgtgattt 26902213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 288
Target Start/End: Original strand, 16641909 - 16642008
Alignment:
Q  195 ctatgaagcacagacactcctcggataaggtgtgtccccgtgt----caggtgtcgtatccgacac--caccgacacatataattacactgaattatgtg 288  Q
    |||||||||||||||||||||||||| ||||||||||| ||||    ||  |||||| ||||||||  |||||||||||||||  ||||| |||||||||    
T  16641909 ctatgaagcacagacactcctcggattaggtgtgtcccggtgttagacacatgtcgtgtccgacacgacaccgacacatataacgacactaaattatgtg 16642008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 195 - 292
Target Start/End: Complemental strand, 18964309 - 18964198
Alignment:
Q  195 ctatgaagcacagacactcctcggataaggtgtgtccccgtgt----caggtgtcgtat------ccgacac----caccgacacatataattacactga 280  Q
    |||||||||||||||||||||||||||||| ||||| ||||||    |||||||||| |      |||||||    |||||||||||||||||||| |||    
T  18964309 ctatgaagcacagacactcctcggataaggcgtgtctccgtgttagacaggtgtcgtgttcaacgccgacacgacacaccgacacatataattacattga 18964210  T
Q  281 attatgtgattt 292  Q
    ||||||||||||    
T  18964209 attatgtgattt 18964198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 292
Target Start/End: Original strand, 43737752 - 43737849
Alignment:
Q  196 tatgaagcacagacactcctcggataaggtgtgtccccgtgtcag----gtgtcgtatccgacaccaccgacacatataattacactgaattatgtgatt 291  Q
    |||||||||| ||||||||| |||||||| || ||||||||||||     |||||| |||||   ||||||||||||||||||||||| ||| |||||||    
T  43737752 tatgaagcacggacactccttggataaggcgtatccccgtgtcagacacctgtcgtgtccga---caccgacacatataattacactgtattttgtgatt 43737848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 242 - 292
Target Start/End: Original strand, 4786329 - 4786376
Alignment:
Q  242 tgtcgtatccgacaccaccgacacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||||   ||||||||||||||||||||||||||||||||    
T  4786329 tgtcgtatccgacacc---gacacatataattacactgaattatgtgattt 4786376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 8847312 - 8847277
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||||||||||||||||||||||||    
T  8847312 caccgacacatataattacactgaattatgtgattt 8847277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 11927089 - 11927124
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||||||||||||||||||||||||    
T  11927089 caccgacacatataattacactgaattatgtgattt 11927124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 34450961 - 34451006
Alignment:
Q  195 ctatgaagcacagacactcctcggataaggtgtgtccccgtgtcag 240  Q
    ||||||||||| ||||||||| |||||||| |||||||||||||||    
T  34450961 ctatgaagcacggacactccttggataaggcgtgtccccgtgtcag 34451006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 292
Target Start/End: Complemental strand, 3025668 - 3025572
Alignment:
Q  197 atgaagcacagacactcctcggataaggtgtgtccccgtgtcag----gtgtcgtatccgacaccaccgacacatataattacactgaattatgtgattt 292  Q
    ||||||||| |||||||||||||| ||  ||||| | |||||||    ||||||| ||||||||    ||||| ||||||||||||||||||||||||||    
T  3025668 atgaagcacggacactcctcggattagccgtgtcacagtgtcagacacgtgtcgtgtccgacact---gacacctataattacactgaattatgtgattt 3025572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 29510232 - 29510276
Alignment:
Q  194 cctatgaagcacagacactcctcggataaggtgtgtccccgtgtc 238  Q
    |||||||||||| |||||||||||||| ||||||||||| |||||    
T  29510232 cctatgaagcacggacactcctcggattaggtgtgtcccggtgtc 29510276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 292
Target Start/End: Complemental strand, 34897138 - 34897106
Alignment:
Q  260 cgacacatataattacactgaattatgtgattt 292  Q
    |||||||||||||||||||||||||||||||||    
T  34897138 cgacacatataattacactgaattatgtgattt 34897106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 11803315 - 11803280
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    |||| |||||||||||||||||||||||||||||||    
T  11803315 caccaacacatataattacactgaattatgtgattt 11803280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 11944721 - 11944686
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    |||||||||||||||||||||||| |||||||||||    
T  11944721 caccgacacatataattacactgagttatgtgattt 11944686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 13844599 - 13844634
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    |||||||||||||||||||||| |||||||||||||    
T  13844599 caccgacacatataattacactcaattatgtgattt 13844634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 14134755 - 14134720
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    |||||||| |||||||||||||||||||||||||||    
T  14134755 caccgacatatataattacactgaattatgtgattt 14134720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 28384997 - 28385032
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    |||||||||||||||||||||||||||||| |||||    
T  28384997 caccgacacatataattacactgaattatgagattt 28385032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 31236580 - 31236615
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    |||||||||||||||||||| |||||||||||||||    
T  31236580 caccgacacatataattacattgaattatgtgattt 31236615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 291
Target Start/End: Original strand, 24362209 - 24362239
Alignment:
Q  261 gacacatataattacactgaattatgtgatt 291  Q
    |||||||||||||||||||||||||||||||    
T  24362209 gacacatataattacactgaattatgtgatt 24362239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 292
Target Start/End: Complemental strand, 34223002 - 34222968
Alignment:
Q  258 accgacacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||||||||| |||||||||||||    
T  34223002 accgacacatataattacacttaattatgtgattt 34222968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Complemental strand, 8293881 - 8293848
Alignment:
Q  257 caccgacacatataattacactgaattatgtgat 290  Q
    |||||||||||||||||||||||||||| |||||    
T  8293881 caccgacacatataattacactgaattacgtgat 8293848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 12071651 - 12071684
Alignment:
Q  6 aaaaacatgaggtatttcaaaatacctctctttt 39  Q
    ||||| ||||||||||||||||||||||||||||    
T  12071651 aaaaatatgaggtatttcaaaatacctctctttt 12071684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 232
Target Start/End: Complemental strand, 25566949 - 25566912
Alignment:
Q  195 ctatgaagcacagacactcctcggataaggtgtgtccc 232  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  25566949 ctatgaagcacagacactcctcggattaggcgtgtccc 25566912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 292
Target Start/End: Complemental strand, 27213601 - 27213568
Alignment:
Q  259 ccgacacatataattacactgaattatgtgattt 292  Q
    |||||||||||||||||| |||||||||||||||    
T  27213601 ccgacacatataattacagtgaattatgtgattt 27213568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 38487156 - 38487193
Alignment:
Q  194 cctatgaagcacagacactcctcggataaggtgtgtcc 231  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  38487156 cctatgaagcacagacactcctcggattatgtgtgtcc 38487193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 8343087 - 8343043
Alignment:
Q  194 cctatgaagcacagacactcctcggataaggtgtgtccccgtgtc 238  Q
    |||||||||||||||||||| |||||| ||| ||||||| |||||    
T  8343087 cctatgaagcacagacactcttcggattaggcgtgtcccggtgtc 8343043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 8343447 - 8343403
Alignment:
Q  194 cctatgaagcacagacactcctcggataaggtgtgtccccgtgtc 238  Q
    |||||||||||||||||||| |||||| ||| ||||||| |||||    
T  8343447 cctatgaagcacagacactcttcggattaggcgtgtcccggtgtc 8343403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 30067967 - 30068011
Alignment:
Q  194 cctatgaagcacagacactcctcggataaggtgtgtccccgtgtc 238  Q
    |||||||||||| ||||||| |||||| ||||||||||| |||||    
T  30067967 cctatgaagcacggacactcatcggattaggtgtgtcccagtgtc 30068011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 36450694 - 36450730
Alignment:
Q  195 ctatgaagcacagacactcctcggataaggtgtgtcc 231  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  36450694 ctatgaagcacagacactcctcggattaggcgtgtcc 36450730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 199 - 291
Target Start/End: Original strand, 30098982 - 30099075
Alignment:
Q  199 gaagcacagacactcctcggataaggtgtgtccccgtgtcag----gtgtcgtatccgacaccaccgacacatataattacactgaattatgtgatt 291  Q
    |||||||  |||||||| |||||||| |||||||||||||||    |||||||||||||||||   ||||||||||||||||| |||||||| ||||    
T  30098982 gaagcacgaacactccttggataaggcgtgtccccgtgtcagacacgtgtcgtatccgacacc---gacacatataattacacagaattatgcgatt 30099075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 195 - 292
Target Start/End: Original strand, 21576685 - 21576783
Alignment:
Q  195 ctatgaagcacagacactcctcggataaggtgtgtccccgtgtcag----gtgtcgtatccgacaccaccgacacatataattacactgaattatgtgat 290  Q
    ||||||||||| |||||||||||||| ||| ||||||| |||||||    ||||||| |||||   || |||||| | ||||||||||||||||||||||    
T  21576685 ctatgaagcacggacactcctcggattaggcgtgtcccagtgtcagacacgtgtcgtgtccga---catcgacacttgtaattacactgaattatgtgat 21576781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 38464312 - 38464356
Alignment:
Q  194 cctatgaagcacagacactcctcggataaggtgtgtccccgtgtc 238  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||    
T  38464312 cctatgaagcacagacactcctcggattaggtgtgtcccggtgtc 38464356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 292
Target Start/End: Complemental strand, 6401627 - 6401519
Alignment:
Q  196 tatgaagcacagacactcctcggataaggtgtgtccccgtgtcag----gtgtcgtatccgacac--------caccgacacatataattacactgaatt 283  Q
    |||||||||| ||||||||| |||||||| || ||||||||||||    ||||||| ||||||||        ||||||||||||||||||||||| |||    
T  6401627 tatgaagcacggacactccttggataaggcgtatccccgtgtcagacacgtgtcgtgtccgacactgacacgacaccgacacatataattacactgtatt 6401528  T
Q  284 atgtgattt 292  Q
     ||||||||    
T  6401527 ttgtgattt 6401519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 292
Target Start/End: Complemental strand, 39758327 - 39758293
Alignment:
Q  258 accgacacatataattacactgaattatgtgattt 292  Q
    |||||||||||||||||||||||||||||||||||    
T  39758327 accgacacatataattacactgaattatgtgattt 39758293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 292
Target Start/End: Complemental strand, 42029871 - 42029773
Alignment:
Q  195 ctatgaagcacagacactcctcggataaggtgtgtccccgtgtcag----gtgtcgtatccgacaccaccgacacatataattacactgaattatgtgat 290  Q
    |||||| |||| |||||||||||||||||| |||||  |||| |||    ||||||| |||||   |||||| ||||||||||||| |||||||||||||    
T  42029871 ctatgatgcacggacactcctcggataaggcgtgtctacgtgacagacatgtgtcgtgtccga---caccgatacatataattacattgaattatgtgat 42029775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 41091263 - 41091295
Alignment:
Q  260 cgacacatataattacactgaattatgtgattt 292  Q
    |||||||||||||||||||||||||||||||||    
T  41091263 cgacacatataattacactgaattatgtgattt 41091295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 230
Target Start/End: Complemental strand, 2548499 - 2548464
Alignment:
Q  195 ctatgaagcacagacactcctcggataaggtgtgtc 230  Q
    |||||||||||||||||||||||||| |||||||||    
T  2548499 ctatgaagcacagacactcctcggattaggtgtgtc 2548464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 3966559 - 3966524
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||||||||||||||| ||||||||    
T  3966559 caccgacacatataattacactgaattgtgtgattt 3966524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 292
Target Start/End: Complemental strand, 6247730 - 6247643
Alignment:
Q  194 cctatgaagcacagacactcctcggataaggtgtgtccccgtgtcaggtgtcgtatccgacaccaccgacacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||||||| ||||||| |||||||||||        ||| ||| |||||   ||||||||| | ||||||||||||||||||||||||    
T  6247730 cctatgaagcacagacacttctcggattaggtgtgtccc--------gtgccgtgtccga---caccgacacttgtaattacactgaattatgtgattt 6247643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 6471892 - 6471927
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    |||| |||||||||||||||||||||||||||||||    
T  6471892 cacccacacatataattacactgaattatgtgattt 6471927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 230
Target Start/End: Complemental strand, 14674368 - 14674333
Alignment:
Q  195 ctatgaagcacagacactcctcggataaggtgtgtc 230  Q
    |||||||||||||||||||||||||| |||||||||    
T  14674368 ctatgaagcacagacactcctcggattaggtgtgtc 14674333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 28588677 - 28588712
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    ||||||||| ||||||||||||||||||||||||||    
T  28588677 caccgacacctataattacactgaattatgtgattt 28588712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 30502391 - 30502426
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    |||||||||||||||||||||||||||| |||||||    
T  30502391 caccgacacatataattacactgaattaagtgattt 30502426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 30542734 - 30542769
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    |||||||||||||||||||||||||||| |||||||    
T  30542734 caccgacacatataattacactgaattaagtgattt 30542769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 292
Target Start/End: Original strand, 18421846 - 18421879
Alignment:
Q  259 ccgacacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||||||||| ||||||||||||    
T  18421846 ccgacacatataattacactggattatgtgattt 18421879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 292
Target Start/End: Original strand, 24273039 - 24273068
Alignment:
Q  263 cacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||||||||||||||||||    
T  24273039 cacatataattacactgaattatgtgattt 24273068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 292
Target Start/End: Complemental strand, 24389175 - 24389146
Alignment:
Q  263 cacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||||||||||||||||||    
T  24389175 cacatataattacactgaattatgtgattt 24389146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 5467984 - 5468016
Alignment:
Q  260 cgacacatataattacactgaattatgtgattt 292  Q
    |||||| ||||||||||||||||||||||||||    
T  5467984 cgacacctataattacactgaattatgtgattt 5468016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 23015995 - 23016027
Alignment:
Q  260 cgacacatataattacactgaattatgtgattt 292  Q
    |||||| ||||||||||||||||||||||||||    
T  23015995 cgacacctataattacactgaattatgtgattt 23016027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 15090 - 15045
Alignment:
Q  195 ctatgaagcacagacactcctcggataaggtgtgtccccgtgtcag 240  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||    
T  15090 ctatgaagcacaaacactcctcggataaggcgtgtccccgtgtcag 15045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 292
Target Start/End: Original strand, 12895055 - 12895154
Alignment:
Q  195 ctatgaagcacagacactcctcggataaggtgtgtccccgtgtcaggtgtcgtatccgacac--caccgacacatataattacactgaattatgtgattt 292  Q
    ||||||||||| ||||||| ||| || ||| || |||| ||||| |||||||| ||||||||  ||||||||| | |||||||  |||||||||||||||    
T  12895055 ctatgaagcacggacactcttcgaattaggcgtatcccggtgtcgggtgtcgtgtccgacacgacaccgacacttgtaattactttgaattatgtgattt 12895154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 292
Target Start/End: Original strand, 5414101 - 5414210
Alignment:
Q  195 ctatgaagcacagacactcctcggataaggtgtgtccccgtgtcag----gtgtcgtatccgacac--------caccgacacatataattacactgaat 282  Q
    ||||||||||| ||||||||| |||||||||||||||| |||||||    ||||||| ||||||||        |||||| |||||||||||||||| ||    
T  5414101 ctatgaagcacggacactccttggataaggtgtgtccctgtgtcagacacgtgtcgtgtccgacactgacacgacaccgatacatataattacactgcat 5414200  T
Q  283 tatgtgattt 292  Q
    | ||||||||    
T  5414201 tttgtgattt 5414210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 292
Target Start/End: Original strand, 23292926 - 23293024
Alignment:
Q  195 ctatgaagcacagacactcctcggataaggtgtgtccccgtgt----caggtgtcgtatccgacaccaccgacacatataattacactgaattatgtgat 290  Q
    ||||||||||| |||||||||||||| ||| ||||||| ||||    || ||||||| |||||   ||||||||| | |||||| |||||||||||||||    
T  23292926 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccga---caccgacacttgtaattatactgaattatgtgat 23293022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 292
Target Start/End: Complemental strand, 49431133 - 49431047
Alignment:
Q  207 gacactcctcggataaggtgtgtccccgtgt----caggtgtcgtatccgacaccaccgacacatataattacactgaattatgtgattt 292  Q
    |||||||||||||||||| ||||||| ||||    || ||||||| |||||   ||||||||| | ||||||||||||||||||||||||    
T  49431133 gacactcctcggataaggcgtgtcccggtgttggacacgtgtcgtgtccga---caccgacacttttaattacactgaattatgtgattt 49431047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 292
Target Start/End: Complemental strand, 36635449 - 36635345
Alignment:
Q  195 ctatgaagcacagacactcctcggataaggtgtgtccccgtgtcag----gtgtcgtatccgacac---caccgacacatataattacactgaattatgt 287  Q
    ||||||||||| ||||||| |||||| ||| ||||||| ||||| |    ||||||| || |||||   |||  ||||||||||||||||||||||||||    
T  36635449 ctatgaagcacggacactcttcggattaggcgtgtcccggtgtctgacgcgtgtcgtgtctgacactcacacgaacacatataattacactgaattatgt 36635350  T
Q  288 gattt 292  Q
    |||||    
T  36635349 gattt 36635345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 259 - 292
Target Start/End: Complemental strand, 40613504 - 40613471
Alignment:
Q  259 ccgacacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||||||||||||||||||||||    
T  40613504 ccgacacatataattacactgaattatgtgattt 40613471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 40784073 - 40784028
Alignment:
Q  194 cctatgaagcacagacactcctcggataaggtgtgtccccgtgtca 239  Q
    |||||||||||| |||||||||||||| ||||||||||| ||||||    
T  40784073 cctatgaagcacggacactcctcggattaggtgtgtcccggtgtca 40784028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 12324038 - 12323998
Alignment:
Q  196 tatgaagcacagacactcctcggataaggtgtgtccccgtg 236  Q
    |||||||||| ||||||||||||||||||||||| ||||||    
T  12324038 tatgaagcacggacactcctcggataaggtgtgttcccgtg 12323998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 53381529 - 53381573
Alignment:
Q  194 cctatgaagcacagacactcctcggataaggtgtgtccccgtgtc 238  Q
    |||||||||||| |||||||||||||| ||||||||||| |||||    
T  53381529 cctatgaagcacggacactcctcggattaggtgtgtcccggtgtc 53381573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 5775361 - 5775396
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    |||||||||||||||||||||| |||||||||||||    
T  5775361 caccgacacatataattacacttaattatgtgattt 5775396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 16189765 - 16189730
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    |||||||||| |||||||||||||||||||||||||    
T  16189765 caccgacacacataattacactgaattatgtgattt 16189730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 22234893 - 22234928
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  22234893 caccgacacatagaattacactgaattatgtgattt 22234928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 40179639 - 40179674
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    ||||||| ||||||||||||||||||||||||||||    
T  40179639 caccgacgcatataattacactgaattatgtgattt 40179674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 54580026 - 54580061
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    ||||||||| ||||||||||||||||||||||||||    
T  54580026 caccgacacttataattacactgaattatgtgattt 54580061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Complemental strand, 15029821 - 15029788
Alignment:
Q  257 caccgacacatataattacactgaattatgtgat 290  Q
    |||| |||||||||||||||||||||||||||||    
T  15029821 caccaacacatataattacactgaattatgtgat 15029788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 17876286 - 17876249
Alignment:
Q  194 cctatgaagcacagacactcctcggataaggtgtgtcc 231  Q
    |||||||||||||||||||||| |||| ||||||||||    
T  17876286 cctatgaagcacagacactccttggattaggtgtgtcc 17876249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 292
Target Start/End: Original strand, 22440609 - 22440638
Alignment:
Q  263 cacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||||||||||||||||||    
T  22440609 cacatataattacactgaattatgtgattt 22440638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 292
Target Start/End: Complemental strand, 903971 - 903943
Alignment:
Q  264 acatataattacactgaattatgtgattt 292  Q
    |||||||||||||||||||||||||||||    
T  903971 acatataattacactgaattatgtgattt 903943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 292
Target Start/End: Complemental strand, 13134503 - 13134471
Alignment:
Q  260 cgacacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||||||| |||||||||||||    
T  13134503 cgacacatataattacactaaattatgtgattt 13134471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 16184951 - 16184907
Alignment:
Q  194 cctatgaagcacagacactcctcggataaggtgtgtccccgtgtc 238  Q
    ||||||||||||| ||||||||||||| ||| ||||||| |||||    
T  16184951 cctatgaagcacaaacactcctcggattaggcgtgtcccagtgtc 16184907  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 19482799 - 19482755
Alignment:
Q  194 cctatgaagcacagacactcctcggataaggtgtgtccccgtgtc 238  Q
    ||||||||||||  ||||||||||||| ||||||||||| |||||    
T  19482799 cctatgaagcacgaacactcctcggattaggtgtgtcccagtgtc 19482755  T

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Target: scaffold0171 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 292
Target Start/End: Complemental strand, 23494 - 23441
Alignment:
Q  241 gtgtcgtatccgacac--caccgacacatataattacactgaattatgtgattt 292  Q
    ||||||| ||||||||  ||||||||| ||||||||||||||||||||||||||    
T  23494 gtgtcgtgtccgacacgacaccgacacttataattacactgaattatgtgattt 23441  T

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Target: scaffold0123 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 292
Target Start/End: Original strand, 44529 - 44563
Alignment:
Q  258 accgacacatataattacactgaattatgtgattt 292  Q
    |||||||||||||||||||||||||||||||||||    
T  44529 accgacacatataattacactgaattatgtgattt 44563  T

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Target: scaffold0003 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 236913 - 236959
Alignment:
Q  194 cctatgaagcacagacactcctcggataaggtgtgtccccgtgtcag 240  Q
    ||||||||||||||||||||||| ||| ||||||||||| |||||||    
T  236913 cctatgaagcacagacactcctcagattaggtgtgtcccggtgtcag 236959  T

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Target: scaffold0652 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 292
Target Start/End: Original strand, 403 - 500
Alignment:
Q  196 tatgaagcacagacactcctcggataaggtgtgtccccgtgt----caggtgtcgtatccgacaccaccgacacatataattacactgaattatgtgatt 291  Q
    |||||||||| |||||||||||||| ||||||||||| ||||    || | ||||| |||||   ||||||||| | ||||||||||||||| |||||||    
T  403 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacgcgtcgtgtccga---caccgacacttgtaattacactgaattttgtgatt 499  T

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Target: scaffold0306 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 292
Target Start/End: Complemental strand, 13523 - 13421
Alignment:
Q  197 atgaagcacagacactcctcggataaggtgtgtccccgtgtcag----gtgtcgtatccgacacc---accgacacatataattacactgaattatgtga 289  Q
    ||||||||| ||||||||| |||| ||||||||||  |||||||    ||||||| |||||||||   |||||| | | ||||| |||||||||||||||    
T  13523 atgaagcacggacactccttggattaggtgtgtcctagtgtcagacgcgtgtcgtgtccgacaccgacaccgacccttgtaattgcactgaattatgtga 13424  T
Q  290 ttt 292  Q
    |||    
T  13423 ttt 13421  T

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Target: scaffold0152 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 292
Target Start/End: Original strand, 21804 - 21906
Alignment:
Q  197 atgaagcacagacactcctcggataaggtgtgtccccgtgtcag----gtgtcgtatccgacacc---accgacacatataattacactgaattatgtga 289  Q
    ||||||||| ||||||||| |||| ||||||||||  |||||||    ||||||| |||||||||   |||||| | | ||||| |||||||||||||||    
T  21804 atgaagcacggacactccttggattaggtgtgtcctagtgtcagacgcgtgtcgtgtccgacaccgacaccgacccttgtaattgcactgaattatgtga 21903  T
Q  290 ttt 292  Q
    |||    
T  21904 ttt 21906  T

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Target: scaffold0044 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 53236 - 53201
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    ||||||||| ||||||||||||||||||||||||||    
T  53236 caccgacacttataattacactgaattatgtgattt 53201  T

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Target: scaffold0036 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 9750 - 9785
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    |||||||||||||||||||||||||||| |||||||    
T  9750 caccgacacatataattacactgaattaagtgattt 9785  T

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Target: scaffold0020 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 135315 - 135350
Alignment:
Q  257 caccgacacatataattacactgaattatgtgattt 292  Q
    ||||||||||||||||||||| ||||||||||||||    
T  135315 caccgacacatataattacacagaattatgtgattt 135350  T

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Target: scaffold0475 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 3428 - 3384
Alignment:
Q  194 cctatgaagcacagacactcctcggataaggtgtgtccccgtgtc 238  Q
    |||||||||||| |||||||||||||| ||| ||||||| |||||    
T  3428 cctatgaagcacggacactcctcggattaggcgtgtcccagtgtc 3384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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