View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16692_low_7 (Length: 324)
Name: NF16692_low_7
Description: NF16692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16692_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 37602192 - 37602481
Alignment:
| Q |
1 |
ccttgaaaggaattccaaaaatctttggaaaacttttaaatttatgccaattcatagttgtacatatgagatgttcattcattgcaggtgttgttgactc |
100 |
Q |
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| T |
37602192 |
ccttgaaaggaattccaaaaatctttggaaaacttttaaatttatgccaattcatagttgtacatatgatatgttcattcattgcaggtgttgttgactc |
37602291 |
T |
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| Q |
101 |
caactcatttagcaatagtgatggaatatgctgctgggggagaactatttgaaagaatttgtactgctggtagattcagtgaggacgaggtagtttatta |
200 |
Q |
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| T |
37602292 |
caactcatttagcaatagtgatggaatatgctgctgggggagaactatttgaaagaatttgtactgctggtagattcagtgaggacgaggtagtttatta |
37602391 |
T |
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| Q |
201 |
taataagccattatcttaattaactgttctagattctagaaaacagtaagtaggatttcatgcaagtaatatattaacaagtgggggtac |
290 |
Q |
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| T |
37602392 |
taataagccattatcttaattaactgttctagattctagaaaacagtaattaggatttcatgcaagtaatatattaacaagtgggggtac |
37602481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 171
Target Start/End: Complemental strand, 39883048 - 39882962
Alignment:
| Q |
85 |
caggtgttgttgactccaactcatttagcaatagtgatggaatatgctgctgggggagaactatttgaaagaatttgtactgctggt |
171 |
Q |
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| T |
39883048 |
caggtggttttgacccctactcatttagcaatagtaatggagtatgcagctggaggggaactctttgagaggatctgtaatgctggt |
39882962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 97 - 193
Target Start/End: Original strand, 39410978 - 39411074
Alignment:
| Q |
97 |
actccaactcatttagcaatagtgatggaatatgctgctgggggagaactatttgaaagaatttgtactgctggtagattcagtgaggacgaggtag |
193 |
Q |
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| T |
39410978 |
actccagctcatctagctatagtgatggagtatgctgcaggaggagaactatttgaaagaatatgcagtgctggtagattttgtgaagacgaggtag |
39411074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 82 - 191
Target Start/End: Complemental strand, 44633111 - 44633002
Alignment:
| Q |
82 |
ttgcaggtgttgttgactccaactcatttagcaatagtgatggaatatgctgctgggggagaactatttgaaagaatttgtactgctggtagattcagtg |
181 |
Q |
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| T |
44633111 |
ttgcaggtggttttgactccaacacatttagcaattgtgatggagtatgcagctggaggagaactctttgagaggatatgcaatgctggcaggttcagtg |
44633012 |
T |
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| Q |
182 |
aggacgaggt |
191 |
Q |
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| T |
44633011 |
aagatgaggt |
44633002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 191
Target Start/End: Original strand, 543063 - 543172
Alignment:
| Q |
82 |
ttgcaggtgttgttgactccaactcatttagcaatagtgatggaatatgctgctgggggagaactatttgaaagaatttgtactgctggtagattcagtg |
181 |
Q |
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||||||||| | |||||||| || ||| | | ||||| ||||| ||||||||||| ||||| || ||||| ||||||| ||||||| |||||||||| |
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| T |
543063 |
ttgcaggtggttttgactcctacacatcttggtatagttatggagtatgctgctggtggagagctctttgaccgaatttgctctgctggaagattcagtg |
543162 |
T |
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| Q |
182 |
aggacgaggt |
191 |
Q |
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| T |
543163 |
aagacgaggt |
543172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 192
Target Start/End: Complemental strand, 27106297 - 27106205
Alignment:
| Q |
100 |
ccaactcatttagcaatagtgatggaatatgctgctgggggagaactatttgaaagaatttgtactgctggtagattcagtgaggacgaggta |
192 |
Q |
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| T |
27106297 |
ccaacacatctagccattgtaatggagtacgctgctggaggagaactgtttgagaggatatgtagtgctggtagatttagtgaagatgaggta |
27106205 |
T |
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