View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16692_low_8 (Length: 320)
Name: NF16692_low_8
Description: NF16692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16692_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 37416444 - 37416751
Alignment:
| Q |
1 |
atagggtgggaaaaataatagtcaaacaaaaaatcaagtttgcaagagctgtgtattatttgtttcctcaaaggggactgtctcatccactcatatcttt |
100 |
Q |
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| T |
37416444 |
atagggtgggaaaagtaatagtcaaacaaaaaatcaagtttgcaagagctgtgtattatttgtttcctcagaggggactgtctcatccactcatatcttt |
37416543 |
T |
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| Q |
101 |
ctgttaatgatgcagctaccgtgtcgtcatagaaactagtattttttcc-gttctttaagaatgctaaaagcatcttctgacatgaatgtgcaagagtaa |
199 |
Q |
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| T |
37416544 |
ctgttaacgatgcagctaccgtgtcgtcatagaaactagtatttttttcagttctttaagaatgctaaaggcatcttctgacatgaatgtgcaagagtaa |
37416643 |
T |
|
| Q |
200 |
cgagcatttacagatattccaatgttcccaagtgttctagcatgtcatgagtcagctaataaatttgcaaatggtgtgtgaagagcatctatagaatgga |
299 |
Q |
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| T |
37416644 |
caagcatttactgatattccaatgttcccaagtgttctagcatgtcatgagtcagctaataaatttgcaaatggtgtgtgaagagcatctatagaatgga |
37416743 |
T |
|
| Q |
300 |
agcaagtg |
307 |
Q |
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| T |
37416744 |
agcaagtg |
37416751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 37423976 - 37424283
Alignment:
| Q |
1 |
atagggtgggaaaaataatagtcaaacaaaaaatcaagtttgcaagagctgtgtattatttgtttcctcaaaggggactgtctcatccactcatatcttt |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37423976 |
atagggtgggaaaagtaatagtcaaacaaaaaatcaagtttgcaagagctgtgtattatttgtttcctcataggggactgtctcatccactcatatcttt |
37424075 |
T |
|
| Q |
101 |
ctgttaatgatgcagctaccgtgtcgtcatagaaactagtattttttcc-gttctttaagaatgctaaaagcatcttctgacatgaatgtgcaagagtaa |
199 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37424076 |
ctgttaacgatgcagctaccgtgtcgtcatagaaactagtatttttttcagttctttaagaatgctaaaggcatcttctgacatgaatgtgcaagagtaa |
37424175 |
T |
|
| Q |
200 |
cgagcatttacagatattccaatgttcccaagtgttctagcatgtcatgagtcagctaataaatttgcaaatggtgtgtgaagagcatctatagaatgga |
299 |
Q |
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| T |
37424176 |
caagcatttactgatattccaatgttcccaagtgttctagcatgtcatgagtcagctaataaatttgcaaatggtgtgtgaagagcatctatagaatgga |
37424275 |
T |
|
| Q |
300 |
agcaagtg |
307 |
Q |
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| T |
37424276 |
agcaagtg |
37424283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 114 - 200
Target Start/End: Complemental strand, 38448837 - 38448751
Alignment:
| Q |
114 |
agctaccgtgtcgtcatagaaactagtattttttccgttctttaagaatgctaaaagcatcttctgacatgaatgtgcaagagtaac |
200 |
Q |
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||||||| |||||||||||||||| |||||| ||| | |||||| ||||| ||||||||| | || ||||||||| | ||||||||| |
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| T |
38448837 |
agctaccatgtcgtcatagaaactcgtatttcttctgctctttaggaatgataaaagcatatgcttacatgaatgagtaagagtaac |
38448751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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