View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16693_high_11 (Length: 396)
Name: NF16693_high_11
Description: NF16693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16693_high_11 |
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| [»] scaffold0110 (1 HSPs) |
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Alignment Details
Target: scaffold0110 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 17 - 382
Target Start/End: Original strand, 5467 - 5832
Alignment:
| Q |
17 |
aactccaacaaactttgtctctttctttgttgttgttactttgtttggtacaatatatgcatgttattgtgctatctacatgactcaaatcaaaacaaaa |
116 |
Q |
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| T |
5467 |
aactccaacaaactttgtctctttctttgttgttgttactttgtttggtacaatatatgcatgttattgtgctatcttcatgactcaaatcagaacaaaa |
5566 |
T |
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| Q |
117 |
agatattggtctcaaacatgtcattttttagattttataatccttattttggtgcttagggatgcaattttatgttgttagtaattaagatagtgtaagg |
216 |
Q |
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| T |
5567 |
agatattggtctcaaacatgtcattttttagattttataatccttattttggtgcttagggatgcaattttatgttgttagtaattgagatagtgtaagg |
5666 |
T |
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| Q |
217 |
gtaattaattgatatgaaagaaaaatactagtagtatctaattagtgttagaatgttgttagaagctagcactaaaaaatatagggtttttattttggtg |
316 |
Q |
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| T |
5667 |
gtaattaattgatatgaaagaaaaatactagtagtatctaattagtgttagaatgttgttagaagctagcactaaaaaatatagggtttttattttggtg |
5766 |
T |
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| Q |
317 |
gaccagagacaagtgcgttgttttaaaagagaaacatttgggacttgtttgtgtggcttccctttg |
382 |
Q |
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| T |
5767 |
ggccagagacaaatgcgttgttttaaaagagaaacatttgggacttgtttgtgtggcttccctttg |
5832 |
T |
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