View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16693_high_16 (Length: 300)
Name: NF16693_high_16
Description: NF16693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16693_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 35 - 271
Target Start/End: Original strand, 176469 - 176696
Alignment:
| Q |
35 |
agaagaggaagaggaatcatcctctgttgttggagtactctgttgttgttcagggttattatgaaaagaagattgtgaagtagcatttgaatgttgagaa |
134 |
Q |
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| T |
176469 |
agaagaggaagaggaatcatcctctgttgttggagtactctgtt---gttcagggttattatgaaaagaagattgtgaagtagcatttgaatgttgagaa |
176565 |
T |
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| Q |
135 |
tgtttaagaagtagccatggaaggtttttggtgttattactagtactagtactagttgttgtagtgtgacgtgttagggttagggttggacaaaaacatg |
234 |
Q |
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| T |
176566 |
tgtttaagaagtagccatggaaggtttttggtgttat------tactagtactagttgttgtagtgtgacgtgttagggttagggttggacaaaaacatg |
176659 |
T |
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| Q |
235 |
tacgaacataagaagcgttggaataacgaggagaaga |
271 |
Q |
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| T |
176660 |
tacgaacataagaagcgttggaataacgaggagaaga |
176696 |
T |
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